View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5612-Insertion-3 (Length: 930)

Name: NF5612-Insertion-3
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5612-Insertion-3
NF5612-Insertion-3
[»] chr5 (1 HSPs)
chr5 (29-859)||(41627562-41628394)
[»] chr2 (23 HSPs)
chr2 (291-626)||(8379567-8379901)
chr2 (422-649)||(30384409-30384634)
chr2 (364-635)||(30468857-30469127)
chr2 (383-627)||(30424777-30425020)
chr2 (388-639)||(30437070-30437320)
chr2 (383-635)||(30483799-30484050)
chr2 (484-659)||(30394905-30395078)
chr2 (383-626)||(30430810-30431052)
chr2 (385-626)||(23783751-23783991)
chr2 (289-638)||(30475744-30476092)
chr2 (385-579)||(23768080-23768274)
chr2 (41-112)||(30394190-30394261)
chr2 (30-101)||(30475344-30475415)
chr2 (29-101)||(30482946-30483018)
chr2 (36-102)||(23767777-23767843)
chr2 (36-102)||(23784236-23784302)
chr2 (36-102)||(23796946-23797012)
chr2 (36-102)||(30384056-30384122)
chr2 (41-101)||(30436484-30436544)
chr2 (41-101)||(30468226-30468286)
chr2 (36-83)||(30424228-30424275)
chr2 (36-83)||(30430261-30430308)
chr2 (36-100)||(8380056-8380120)
[»] chr8 (4 HSPs)
chr8 (486-579)||(15852345-15852438)
chr8 (486-629)||(15859283-15859425)
chr8 (486-579)||(15845138-15845231)
chr8 (486-579)||(15866038-15866131)


Alignment Details
Target: chr5 (Bit Score: 720; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 29 - 859
Target Start/End: Complemental strand, 41628394 - 41627562
Alignment:
Q  29 cgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagttcaaatgaatttttaca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628394 cgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagttcaaatgaatttttaca 41628295  T
Q  129 ttcctctatggaggtaattaagactattctttatatcat---atatagtgtttaactattgaagtctattcattttttatgtctctaatatttgtaatta 225  Q
    |||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41628294 ttcctctatggaggtaattaagactaatctttatatcatcatatatagtgtttaactattaaagtctattcattttttatgtctctaatatttgtaatta 41628195  T
Q  226 atcactaggaggccagttacacgaatgacatgtttatttgcaggtttgtacctactatggtcaataggaggattaatgaaattgggaaagatataaaatc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628194 atcactaggaggccagttacacgaatgacatgtttatttgcaggtttgtacctactatggtcaataggaggattaatgaaattgggaaagatataaaatc 41628095  T
Q  326 ttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaaaataagaatgatttattaggtattcttatagagacaaaccacaag 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628094 ttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaaaataagaatgatttattaggtattcttatagagacaaaccacaag 41627995  T
Q  426 gaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattcaggaatgcaagttgttctactttgcagggcaagagactactt 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41627994 gaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattcaggaatgcaagttgttctactttgcagggcaagagactactt 41627895  T
Q  526 caactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaagggcaagggaggaagtattacaaatctttggcaacaaaaaac 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41627894 caactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaa-gcaagggcaagggaggaagtattacaaatctttggcaacaaaaaac 41627796  T
Q  626 ctaattttgatggggctaaataacttgaagattggtaagtatatattgtgttattatcttcatatcgtacgagtttga--nnnnnnnnctttatagtatt 723  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||          |||| ||||| |    
T  41627795 ctaattttgat-gggctaaataacttgaagatt-gtaagtatatattgtgttattatcttcatatcgtatgagtttgattttttttttctttttagta-t 41627699  T
Q  724 tttacttaagagttgcaacttttgtcc-acaaatttaaggctttgtcacaatcatgaggtctaagctttagaaaatggctctagatccctcaattgactc 822  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  41627698 tttacttaagagttgcaacttttgtccaacaaatttaaggctttgtcacaatcatgaggtctaagctttagaaaatggctctagatccctcaaatggctc 41627599  T
Q  823 tagggatcctggatcatattgtaactcctgatctgtc 859  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41627598 tagggatcctggatcatattgtaactcccgatctgtc 41627562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 9e-54; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 291 - 626
Target Start/End: Complemental strand, 8379901 - 8379567
Alignment:
Q  291 aggaggattaatgaaattgggaaagatataaaatcttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaaaataagaatg 390  Q
    ||||||||  |||||||||  ||||||||| | ||||| ||||   |||| || |||||||| | ||||  | | |||| ||||| || || | ||||||    
T  8379901 aggaggatgcatgaaattgaaaaagatatagattcttctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatg 8379802  T
Q  391 atttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattcaggaatg 490  Q
    | || |||||| ||||| ||||| |||||||| | ||||||| ||| ||||||||||||  |||| ||||||||| | ||||||||||| |   ||||||    
T  8379801 acttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatg 8379702  T
Q  491 caagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaagggcaag 590  Q
    |||||| |||||||| |||||||||||  ||||||||||| | ||||||||||||||| |||| ||||||||||||||||| |||||| | | | || ||    
T  8379701 caagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaa-gaacgtgctag 8379603  T
Q  591 ggaggaagtattacaaatctttggcaacaaaaaacc 626  Q
    |||||||||||||||||| |||||||||||||||||    
T  8379602 ggaggaagtattacaaatatttggcaacaaaaaacc 8379567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 422 - 649
Target Start/End: Original strand, 30384409 - 30384634
Alignment:
Q  422 caaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattcaggaatgcaagttgttctactttgcagggcaagagact 521  Q
    |||||||||| | ||| ||| |||||||  | |||||||||||| | |||| |||||| |  ||||||||||||||||| |||||||||| |||||||||    
T  30384409 caaggaaattgacgaaaatgaaaacaacaaggatgtgggaatgagtcttgatgatgtagtcgaggaatgcaagttgttccactttgcaggtcaagagact 30384508  T
Q  522 acttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaagggcaagggaggaagtattacaaatctttggcaacaaa 621  Q
    |||||   ||| ||||||||||||||| |||||||||||||||||||||| ||||||  |  | |||||||||||||| |||||  |||||||||||| |    
T  30384509 acttcggttttgcttgtttggacaatgatattattgagtaggtaccctgattggcaa-acccgtgcaagggaggaagtgttacatgtctttggcaacaga 30384607  T
Q  622 aaacctaattttgatggggctaaataac 649  Q
    |||||  |||||||| ||||||||||||    
T  30384608 aaaccagattttgat-gggctaaataac 30384634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 364 - 635
Target Start/End: Original strand, 30468857 - 30469127
Alignment:
Q  364 taaaggaaggtggagaaaataagaatgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaat 463  Q
    |||||| ||||| || || |||| ||||||| |||||||| ||| ||||| |||| ||||| |||||  |||||||||| |||||   | |||| |||||    
T  30468857 taaaggcaggtgaagcaactaaggatgatttgttaggtatacttttagagtcaaatcacaaagaaatggaagaacatggcaacaataaggatgtcggaat 30468956  T
Q  464 gaatattgaagatgtaattcaggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtagg 563  Q
    || | |||| ||||| ||  ||||||||||| | |||||||||||||| |||||||| |||||   ||| ||||||||||||||||| ||||||||||||    
T  30468957 gagtcttgatgatgtgatagaggaatgcaagctattctactttgcaggccaagagaccacttctgttttgcttgtttggacaatggtgttattgagtagg 30469056  T
Q  564 taccctgagtggcaaggcaagggcaagggaggaagtattacaaatctttggcaacaaaaaacctaattttga 635  Q
    ||||| || |||||| ||  | |||||||| |||||||||||  ||||||||||||| |||||| |||||||    
T  30469057 taccccgattggcaa-gcgcgtgcaagggaagaagtattacaggtctttggcaacaataaacctgattttga 30469127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 383 - 627
Target Start/End: Original strand, 30424777 - 30425020
Alignment:
Q  383 taagaatgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaatt 482  Q
    |||| |||| ||||||||||| ||| ||||| |||| ||||| |||||  ||||||| || |||||   |||||| ||||||| | |||| ||||||||     
T  30424777 taaggatgacttattaggtatacttttagagtcaaatcacaaagaaatggaagaacacggcaacaataagaatgttggaatgagtcttgatgatgtaata 30424876  T
Q  483 caggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggca 582  Q
     ||||||||||| | |||||||||||||| |||||||| |||||   ||| ||||||||||||||||| || ||||||||||||||||| |||||| | |    
T  30424877 gaggaatgcaagctcttctactttgcaggccaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaa-gaa 30424975  T
Q  583 agggcaagggaggaagtattacaaatctttggcaacaaaaaacct 627  Q
     | |||||||| |||||||||||| | ||||||||||| ||||||    
T  30424976 cgtgcaagggaagaagtattacaagtttttggcaacaataaacct 30425020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 388 - 639
Target Start/End: Original strand, 30437070 - 30437320
Alignment:
Q  388 atgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattcagga 487  Q
    ||||||| |||||||| ||| ||||| |||| ||||| |||||  |||||||||  |||||   |||||| ||||||| | |||| ||||||||  ||||    
T  30437070 atgatttgttaggtatacttttagagtcaaatcacaaagaaatggaagaacatgacaacaataagaatgttggaatgagtcttgacgatgtaatagagga 30437169  T
Q  488 atgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaagggc 587  Q
    ||||||| | ||||||||||||||   |||||| |||||   ||| |||||||||||||| || || ||||||||||||||||| |||||| ||| | ||    
T  30437170 atgcaagctattctactttgcaggtgcagagacaacttctgttttgcttgtttggacaatagtgttgttgagtaggtaccctgattggcaa-gcacgtgc 30437268  T
Q  588 aagggaggaagtattacaaatctttggcaacaaaaaacctaattttgatggg 639  Q
    ||||||||||||||||||| | ||||||||||| |||||  |||||||||||    
T  30437269 aagggaggaagtattacaagtatttggcaacaataaacccgattttgatggg 30437320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 383 - 635
Target Start/End: Original strand, 30483799 - 30484050
Alignment:
Q  383 taagaatgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaatt 482  Q
    ||||||||| ||||||||||||||| | ||| |||| |||||||||||||||||  |    |||||   |||||| ||||||||| |||| ||||||||     
T  30483799 taagaatgacttattaggtattcttcttgagtcaaatcacaaggaaattaaagataacaacaacaataagaatgttggaatgaatcttgatgatgtaatc 30483898  T
Q  483 caggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggca 582  Q
     ||||||||||| | |||||| |||||||| |||| || ||||||  ||| |||||||||||||| ||||||||||||||| ||||| | |||||| |||    
T  30483899 aaggaatgcaagctattctaccttgcaggggaagaaaccacttcagttttgcttgtttggacaattgtattattgagtaggcaccctaattggcaa-gca 30483997  T
Q  583 agggcaagggaggaagtattacaaatctttggcaacaaaaaacctaattttga 635  Q
     | ||||| ||||||||  ||||| | |||||||||||| ||||  |||||||    
T  30483998 cgtgcaagagaggaagtgctacaagtttttggcaacaaacaaccagattttga 30484050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 484 - 659
Target Start/End: Original strand, 30394905 - 30395078
Alignment:
Q  484 aggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaa 583  Q
    ||||||||||||||||| | |||||||||||||| ||||||||   ||| ||||||||||||||| |||| ||||||||||||||||| ||||||  ||     
T  30394905 aggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaa-acac 30395003  T
Q  584 gggcaagggaggaagtattacaaatctttggcaacaaaaaacctaattttgatggggctaaataacttgaagattg 659  Q
    | || ||||||||||| |||||  |||||||||||||||||||  |||||||| |||||||||||| | |||||||    
T  30395004 gtgctagggaggaagtgttacatgtctttggcaacaaaaaaccagattttgat-gggctaaataacctaaagattg 30395078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 383 - 626
Target Start/End: Original strand, 30430810 - 30431052
Alignment:
Q  383 taagaatgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaatt 482  Q
    |||| |||| ||||||||||| ||| ||||| |||| || || |||||  ||||||| || |||||   |||||| ||||||| | |||| ||||||||     
T  30430810 taaggatgacttattaggtatacttttagagtcaaatcaaaaagaaatggaagaacaaggcaacaataagaatgttggaatgagtcttgatgatgtaata 30430909  T
Q  483 caggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggca 582  Q
     ||||||||||| | |||||||||||||| |||||||| |||||   ||| ||||||||||||||||| || ||||||||||| || || |||||| | |    
T  30430910 gaggaatgcaagctcttctactttgcaggacaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaaccagattggcaa-gaa 30431008  T
Q  583 agggcaagggaggaagtattacaaatctttggcaacaaaaaacc 626  Q
     | |||||||| |||||||||||| | ||||||||||| |||||    
T  30431009 cgtgcaagggaagaagtattacaagtatttggcaacaataaacc 30431052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 385 - 626
Target Start/End: Complemental strand, 23783991 - 23783751
Alignment:
Q  385 agaatgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattca 484  Q
    ||||||| ||||||||| | ||  ||||| | |||||||  |||||||||||||||||||||  |  |||| ||||| ||| | ||||||| ||| |       
T  23783991 agaatgacttattaggtctcctcctagagtcgaaccacagagaaattaaagaacatggaaacgtcaagaatatgggattgagtcttgaagaagtagtcgg 23783892  T
Q  485 ggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaag 584  Q
    |||||||| ||| ||| |  |||||||||||||||||||||||  ||| ||||||||||| ||||| || ||||||||||||||||| |||||| | | |    
T  23783891 ggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaa-gaacg 23783793  T
Q  585 ggcaagggaggaagtattacaaatctttggcaacaaaaaacc 626  Q
     |||||| ||||||||||| | || ||||||||  |||||||    
T  23783792 tgcaaggaaggaagtattagagatatttggcaatgaaaaacc 23783751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 289 - 638
Target Start/End: Original strand, 30475744 - 30476092
Alignment:
Q  289 ataggaggattaatgaaattgggaaagatataaaatcttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaaaataagaa 388  Q
    |||||||||| || |||||||  | ||| |||||| |||||||||  |||||||| ||||| || | ||    | ||||||  |||| || || |||| |    
T  30475744 ataggaggatgaaggaaattgacagagaaataaaagcttcacttactgatatgattaacaagagagagatcgcactaaaggcgggtgaagcaactaagga 30475843  T
Q  389 tgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattcaggaa 488  Q
    ||||||||||||||| ||| | |||   || ||||| |||||  ||||||| |  |||||   | |||| ||||||| | |||| ||||||||  | |||    
T  30475844 tgatttattaggtatacttttggagttgaatcacaaagaaatggaagaacacgacaacaataaggatgtcggaatgagtcttgacgatgtaatagaagaa 30475943  T
Q  489 tgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaagggca 588  Q
    |||||| | ||||||||||||||||||||||| |||||   ||| ||||||||| ||||| | || ||||||||||| ||||| |||||| ||  | |||    
T  30475944 tgcaagctattctactttgcagggcaagagaccacttctgttttgcttgtttgggcaatgatgttgttgagtaggtatcctgattggcaa-gctcgtgca 30476042  T
Q  589 agggaggaagtattacaaatctttggcaacaaaaaacctaattttgatgg 638  Q
    |||||||||||||| ||| |||| ||||| ||||||||  ||||||||||    
T  30476043 agggaggaagtattgcaagtcttcggcaataaaaaaccagattttgatgg 30476092  T

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Target: chr2; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 385 - 579
Target Start/End: Original strand, 23768080 - 23768274
Alignment:
Q  385 agaatgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattca 484  Q
    ||||||| ||||||||| | ||  ||||| | |||||||| |||||||||||||||||||||  |  |||| ||||| ||| | ||||||| ||| |       
T  23768080 agaatgacttattaggtctcctcctagagtcgaaccacaaagaaattaaagaacatggaaacttcaagaatatgggattgagtcttgaagaagtagtcgg 23768179  T
Q  485 ggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaag 579  Q
    |||||||| ||| ||| |  |||||||||||||||||||||||  ||| ||||||||||| ||||| || ||||||||| |||| || |||||||    
T  23768180 ggaatgcatgttattccatattgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggcacccagattggcaag 23768274  T

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Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 30394190 - 30394261
Alignment:
Q  41 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagtt 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||| ||||    
T  30394190 ggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttataacaacagtt 30394261  T

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Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 30475344 - 30475415
Alignment:
Q  30 gaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 101  Q
    ||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  30475344 gaacagcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaatcgagcaagctgaactta 30475415  T

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Target: chr2; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 30482946 - 30483018
Alignment:
Q  29 cgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 101  Q
    |||||| |||| |||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  30482946 cgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 30483018  T

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Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 23767777 - 23767843
Alignment:
Q  36 cattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 102  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23767777 catttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23767843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 23784302 - 23784236
Alignment:
Q  36 cattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 102  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23784302 catttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23784236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 23796946 - 23797012
Alignment:
Q  36 cattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 102  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23796946 catttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23797012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 30384056 - 30384122
Alignment:
Q  36 cattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 102  Q
    |||| |||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  30384056 catttggaagtagctatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttat 30384122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 30436484 - 30436544
Alignment:
Q  41 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 101  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  30436484 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaactta 30436544  T

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Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 30468226 - 30468286
Alignment:
Q  41 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 101  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  30468226 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaactta 30468286  T

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Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 30424228 - 30424275
Alignment:
Q  36 cattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaa 83  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  30424228 catttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30424275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 30430261 - 30430308
Alignment:
Q  36 cattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaa 83  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  30430261 catttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30430308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 8380120 - 8380056
Alignment:
Q  36 cattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactt 100  Q
    |||| ||||||||||| |||||||||| |||||||||| | |||||||  ||||||| |||||||    
T  8380120 catttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 8380056  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 579
Target Start/End: Complemental strand, 15852438 - 15852345
Alignment:
Q  486 gaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaag 579  Q
    |||||||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||||||||||| |||||  | ||||| ||||| |||||||    
T  15852438 gaatgcaaattgttttacttggcagggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaag 15852345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 486 - 629
Target Start/End: Complemental strand, 15859425 - 15859283
Alignment:
Q  486 gaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaaggcaagg 585  Q
    |||||||| ||||| ||| |||| ||||||||||| |||| || ||| || |||||||||||||| |||||  | ||||| ||||| |||||| ||| |     
T  15859425 gaatgcaaattgttttaccttgctgggcaagagacgacttaaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaa-gcacgt 15859327  T
Q  586 gcaagggaggaagtattacaaatctttggcaacaaaaaacctaa 629  Q
    |||||||||||||| || ||| | ||||| ||| |||| |||||    
T  15859326 gcaagggaggaagttttgcaagtttttgggaaccaaaatcctaa 15859283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 486 - 579
Target Start/End: Complemental strand, 15845231 - 15845138
Alignment:
Q  486 gaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaag 579  Q
    |||||||| ||||| ||| |||| ||||||||||| ||||||| ||| || |||||||||||||| |||||  | ||||| ||||| |||||||    
T  15845231 gaatgcaaattgttttaccttgctgggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaag 15845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 579
Target Start/End: Complemental strand, 15866131 - 15866038
Alignment:
Q  486 gaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaag 579  Q
    |||||||| ||||| ||| |||| ||||||||||| || |||| ||| || |||||||||||||| |||||  | ||||| ||||| |||||||    
T  15866131 gaatgcaaattgttttacattgctgggcaagagaccacctcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaag 15866038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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