View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5612-Insertion-4 (Length: 743)
Name: NF5612-Insertion-4
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5612-Insertion-4 |
 | |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0128 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Original strand, 22472276 - 22472791
Alignment:
| Q |
8 |
ttctatacgacaaatactatagctgaagagaatttagctacaataagcctctttcatcctaccatcttagcatgtattattaattacattgaattttctc |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||||| |
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|
| T |
22472276 |
ttctatacaacaaatactatagctgaagagaatttagctacaataagcctctttcatccaaccatcttgacatgtatcaccaattacattgaattttctc |
22472375 |
T |
|
| Q |
108 |
aaagttaggaaatgaagtgaaataacaaactacatgaaaagtacaaagacacaagaaaagtgaagaaataataatgtaaaagaaattagcttctactgag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22472376 |
aaagttaggaaatgaagtgaaataacaaactacatgaaaagtacaaagacacaagaaaagtgaagaaataataatgtagaagaaattagcttctactgag |
22472475 |
T |
|
| Q |
208 |
atataataatgtaagtatgtagcacaagtgactccaacggtttcatgcaattaaaaataaggaattctcgcttccaaaatagtgtaattgaattggtgta |
307 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
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|
| T |
22472476 |
atataataatgcaagtatgtagcaaaagtgactc-aacggtttcatgcaattaaaaataatgaattctcccttccaaaatagtgtaattgaattggtgaa |
22472574 |
T |
|
| Q |
308 |
aatttaccaagaatattcaatatgtatcgatttgaaaaaacattatatgctaaaaatatacatagataatcacagtatcacacgattgaaagttgaatag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22472575 |
aatttaccaagaatattcaatatgtatcgatttgaaaaaacattatatgctaaaaatatacatagataatcacagtatcacacaattgaaagttgaatag |
22472674 |
T |
|
| Q |
408 |
gatcaattaatagattattcatttttatgagaatgttttgaagtaaaagaaataatcacacaattgaaaccaagttgatgaattaatataaatttaaact |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
22472675 |
gatcaattaatagattattcatttttatgagaatgttttgaagtaaaagaaataatcacacaat--aaaccaagttgatgaattaatataaatttaaaca |
22472772 |
T |
|
| Q |
508 |
ggaaataacatcaatattg |
526 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22472773 |
ggaaataacatcaatattg |
22472791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 35205171 - 35205225
Alignment:
| Q |
33 |
aagagaatttagctacaataagcctctttcatcctaccatcttagcatgtattat |
87 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||||| |||||||||| |
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|
| T |
35205171 |
aagagaatttagctccaataagcctctttcaacataccatcttgacatgtattat |
35205225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 21218381 - 21218452
Alignment:
| Q |
433 |
tatgagaatgttttgaagtaaaagaaataatcacacaattgaaaccaagttgatgaattaatataaatttaa |
504 |
Q |
| |
|
||||| || ||||||||| ||| |||||||||||||||||||||||| || | |||| || |||||||||| |
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|
| T |
21218381 |
tatgacaaagttttgaagcaaaggaaataatcacacaattgaaaccatgtacaagaatgaaaataaatttaa |
21218452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 8e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 536 - 743
Target Start/End: Original strand, 22980315 - 22980522
Alignment:
| Q |
536 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactatagtactactcttagagtaacacagccttgtaat |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
22980315 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactgtagtactgctcttagagtaacacagccttgtaat |
22980414 |
T |
|
| Q |
636 |
aactactagtttgtcagaactagttgagttagttagagatccaatgttttatatatagctacattgtatctaactttgattcattcaataaaaagagata |
735 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22980415 |
aactacttgtttgttagaactagttgagttagttagagatccaaggttttatatatagctacattgtaactaactttgattcattcaataaaaagagata |
22980514 |
T |
|
| Q |
736 |
ttcttttc |
743 |
Q |
| |
|
|| ||||| |
|
|
| T |
22980515 |
ttattttc |
22980522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 536 - 743
Target Start/End: Original strand, 3371789 - 3371994
Alignment:
| Q |
536 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactatagtactactcttagagtaacacagccttgtaat |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3371789 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactatagtactgctcttagagtaacacagccttgtaat |
3371888 |
T |
|
| Q |
636 |
aactactagtttgtcagaactagttgagttagttagagatccaatgttttatatatagctacattgtatctaactttgattcattcaataaaaagagata |
735 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
3371889 |
aactactagtttgttagaactagttgagttagttagagatccaaggttttatatatagctacaatgtaactaactttgattcattcaat--aaagagata |
3371986 |
T |
|
| Q |
736 |
ttcttttc |
743 |
Q |
| |
|
|||||||| |
|
|
| T |
3371987 |
ttcttttc |
3371994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 536 - 743
Target Start/End: Complemental strand, 20040584 - 20040375
Alignment:
| Q |
536 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactatagtactactcttagagtaacacagccttgtaat |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
20040584 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatccgttacacatcatagttactgtagtactgctcttagagtaacaaagccttgtaat |
20040485 |
T |
|
| Q |
636 |
aactactagtttgtcagaactagttgagttagttagagatccaatgttttatatatagctacattgtatctaactttgattcattcaataa--aaagaga |
733 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
20040484 |
aactactagtttgttagaactagttgagttagttagagatccaaggttttatatatagctacattgtaactaactttgattcattcaataaagaaaaaga |
20040385 |
T |
|
| Q |
734 |
tattcttttc |
743 |
Q |
| |
|
|||||||||| |
|
|
| T |
20040384 |
tattcttttc |
20040375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 536 - 743
Target Start/End: Complemental strand, 20045305 - 20045096
Alignment:
| Q |
536 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactatagtactactcttagagtaacacagccttgtaat |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
20045305 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatccgttacacatcatagttactgtagtactgctcttagagtaacaaagccttgtaat |
20045206 |
T |
|
| Q |
636 |
aactactagtttgtcagaactagttgagttagttagagatccaatgttttatatatagctacattgtatctaactttgattcattcaataa--aaagaga |
733 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
20045205 |
aactactagtttgttagaactagttgagttagttagagatccaaggttttatatatagctacattgtaactaactttgattcattcaataaagaaaaaga |
20045106 |
T |
|
| Q |
734 |
tattcttttc |
743 |
Q |
| |
|
|||||||||| |
|
|
| T |
20045105 |
tattcttttc |
20045096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 109; Significance: 2e-54; HSPs: 8)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 9478 - 9314
Alignment:
| Q |
8 |
ttctatacgacaaatactatagctgaagagaatttagctacaataagcctctttcatcctaccatcttagcatgtattattaattacattgaattttctc |
107 |
Q |
| |
|
||||||| ||||| || ||| || ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9478 |
ttctatagaacaaacacaataacttaagtgaatttcgttacaataagcctctttcatcctaccatcttagcatgtattattaattacattgaattttcac |
9379 |
T |
|
| Q |
108 |
aaagttaggaaatgaagtgaaataacaaactacatgaaaagtacaaagacacaagaaaagtgaag |
172 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9378 |
aaagttaggcaatgaagtgaaacaacaaactacatgaaaagaacaaagacacatgaaaagtgaag |
9314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 9159 - 9061
Alignment:
| Q |
283 |
aaaatagtgtaattgaattggtgtaaatttaccaagaatattcaatatgtatcgatttgaaaaaacattatatgctaaaaatatacatagataatcaca |
381 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9159 |
aaaatagtgtaatttaattggtgtaaatttaccaagaatactcaatatgtatcgatttgaaaaaacattatatgctaacaatatacatagataatcaca |
9061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 327 - 534
Target Start/End: Complemental strand, 26209 - 26010
Alignment:
| Q |
327 |
atatgtatcgatttgaaaaaacatt-atatgctaaaaatatacatagataatcacagtatcacacgattgaaagttgaataggatcaattaatagattat |
425 |
Q |
| |
|
|||| ||| |||||||||||| ||| ||||||| |||||||||||||||||| ||| | ||||||| | | |||||| |||| |||||||| | |
|
|
| T |
26209 |
atatttattgatttgaaaaaaaatttatatgcttaaaatatacatagataattaca--------caattgaaattagtataggaccaatcaatagattct |
26118 |
T |
|
| Q |
426 |
tcatttttatgagaatgttttgaagtaaaagaaataatcacacaattgaaaccaagttgatgaattaatataaatttaaactggaaataacatcaatatt |
525 |
Q |
| |
|
|||||| | ||||| | |||||| ||||||| |||||||||||||||| | ||| || ||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
26117 |
tcatttatgtgagatttttttgatttaaaagacataatcacacaattgaca-caaatttatgaattaacacaaatttaaacctgaaataacatcaatatt |
26019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 459 - 534
Target Start/End: Complemental strand, 9069 - 8994
Alignment:
| Q |
459 |
ataatcacacaattgaaaccaagttgatgaattaatataaatttaaactggaaataacatcaatattgaactgcaa |
534 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
9069 |
ataatcacacaattgaaaccaagttcatgagttaacataaatttaaacatgaaataacatcaatattgaattgcaa |
8994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 27106 - 27023
Alignment:
| Q |
89 |
aattacattgaattttctcaaagttaggaaatgaagtgaaataacaaactacatgaaaagtacaaagacacaagaaaagtgaag |
172 |
Q |
| |
|
||||||| ||||||| |||||||||||| || ||||||||| ||||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
27106 |
aattacagtgaatttgctcaaagttaggcaaggaagtgaaacaacaaaccacatgaaaagaacaaagacacatgaaaagtgaag |
27023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 26853 - 26800
Alignment:
| Q |
270 |
aattctcgcttccaaaatagtgtaattgaattggtgtaaatttaccaagaatat |
323 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26853 |
aattctcccttctaaaatagtgtaactgaattggtgtaaatttaccaagaatat |
26800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 26974 - 26920
Alignment:
| Q |
187 |
aagaaattagcttctactgagatataataatgtaagtatgtagcacaagtgactc |
241 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||||||| ||||||||| |
|
|
| T |
26974 |
aagaaattagcttctactgagatagaataatgcaattatgtagcaaaagtgactc |
26920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 9268 - 9227
Alignment:
| Q |
187 |
aagaaattagcttctactgagatataataatgtaagtatgta |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
9268 |
aagaaattagcttctactgagatacaataatgcaagtatgta |
9227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 42300467 - 42300423
Alignment:
| Q |
21 |
atactatagctgaagagaatttagctacaataagcctctttcatc |
65 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
42300467 |
atactatagctgaagagaatgtaactccaataagcctctttcatc |
42300423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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