View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5612-Insertion-5 (Length: 683)
Name: NF5612-Insertion-5
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5612-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 230 - 603
Target Start/End: Complemental strand, 5863851 - 5863485
Alignment:
| Q |
230 |
cattcacatatttgatatttcatatcatgatattgaatataacaagaggagacaatatttcatgatcagaaaaaccaaaatctggctcaaggaaacaagc |
329 |
Q |
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| T |
5863851 |
cattcacatatttgatatttcatatcatgatat-gaatataacaagaggagacaatatttcatgatcagaaacaccaaaatctggctcaaggaaacaagc |
5863753 |
T |
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| Q |
330 |
aatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctccatgaccatgatgtggtcctcaaaagaaaactagaagg |
429 |
Q |
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| T |
5863752 |
aatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctcc------atgatgtggtcctcaaaagaatactagaagg |
5863659 |
T |
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| Q |
430 |
gtattgtggtcctcatcaacatcaacaaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaacaccacgtagcccc |
529 |
Q |
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| T |
5863658 |
gtattgtggtcctcatcaacatcaataaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaacaccacgtagcccc |
5863559 |
T |
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| Q |
530 |
taaatggaagtttcatgtgannnnnnnnnagggatatattattgcattaaatttactggaccaaccatccagag |
603 |
Q |
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| T |
5863558 |
taaatggaagtttcatgtgatttttttttagggatttattattgcattaaatttactggaccaaccatccagag |
5863485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 5864024 - 5863875
Alignment:
| Q |
72 |
aagtcttgatcaattttctgttttaatgcat----caaatgatataggagtggaatgataaactgctaattcagcaaaatccatatctcatttggcactt |
167 |
Q |
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| T |
5864024 |
aagtcttgatcaattttctgttttaatgcatgcatcatatgatatacgagtggaatgataaagtgctaattcagcaaaatccatatctcatttggcactt |
5863925 |
T |
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| Q |
168 |
acttggttggtccactcaataattctagtggatattcaaacgcgaccaag |
217 |
Q |
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| T |
5863924 |
acttggttggtccactcaataattctagtggatattcaaacgcgatcaag |
5863875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 5864081 - 5864038
Alignment:
| Q |
10 |
taacatacaatggcgtagtggcgttcaatttcacgtatcaagtg |
53 |
Q |
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| T |
5864081 |
taacatacaatggcgtagcggcgttcaatttcacgtatcatgtg |
5864038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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