View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5612-Insertion-6 (Length: 341)

Name: NF5612-Insertion-6
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5612-Insertion-6
NF5612-Insertion-6
[»] chr5 (18 HSPs)
chr5 (7-341)||(2582289-2582629)
chr5 (160-325)||(35650274-35650437)
chr5 (190-324)||(3440823-3440958)
chr5 (160-272)||(43222082-43222195)
chr5 (204-324)||(9465743-9465861)
chr5 (158-318)||(31156501-31156658)
chr5 (180-266)||(38283755-38283840)
chr5 (187-258)||(9124947-9125018)
chr5 (163-270)||(36290561-36290669)
chr5 (163-250)||(28043544-28043631)
chr5 (205-322)||(14733556-14733670)
chr5 (172-257)||(23253774-23253859)
chr5 (193-237)||(1923480-1923524)
chr5 (145-219)||(43309051-43309123)
chr5 (158-232)||(26452512-26452586)
chr5 (164-214)||(30355218-30355268)
chr5 (158-207)||(13032063-13032112)
chr5 (158-207)||(39902359-39902408)
[»] chr2 (7 HSPs)
chr2 (158-273)||(41072954-41073070)
chr2 (158-324)||(373121-373285)
chr2 (158-216)||(30824122-30824180)
chr2 (158-270)||(374947-375060)
chr2 (158-270)||(23459854-23459967)
chr2 (184-219)||(23464251-23464286)
chr2 (231-324)||(35315529-35315620)
[»] chr4 (9 HSPs)
chr4 (158-272)||(38865233-38865346)
chr4 (189-324)||(3512281-3512414)
chr4 (203-270)||(34927484-34927553)
chr4 (180-270)||(56453828-56453919)
chr4 (161-219)||(52030754-52030812)
chr4 (180-242)||(4633762-4633825)
chr4 (158-272)||(37002257-37002372)
chr4 (161-270)||(5524404-5524514)
chr4 (173-219)||(54588829-54588875)
[»] chr3 (11 HSPs)
chr3 (161-324)||(28229359-28229515)
chr3 (161-257)||(33338193-33338288)
chr3 (180-274)||(33979910-33980005)
chr3 (191-257)||(48950597-48950663)
chr3 (158-253)||(32577476-32577570)
chr3 (158-270)||(49679278-49679391)
chr3 (172-257)||(20485727-20485812)
chr3 (158-270)||(31523676-31523789)
chr3 (158-275)||(42613034-42613152)
chr3 (158-207)||(43720029-43720078)
chr3 (165-213)||(778895-778943)
[»] chr1 (8 HSPs)
chr1 (158-258)||(36700842-36700942)
chr1 (158-258)||(36716946-36717046)
chr1 (159-269)||(24413291-24413402)
chr1 (181-272)||(1358398-1358489)
chr1 (159-198)||(32887871-32887910)
chr1 (180-270)||(52280047-52280138)
chr1 (203-256)||(26768894-26768947)
chr1 (158-207)||(50484330-50484379)
[»] chr7 (18 HSPs)
chr7 (158-272)||(30760262-30760374)
chr7 (181-272)||(20400029-20400121)
chr7 (189-271)||(676029-676112)
chr7 (156-322)||(18118455-18118623)
chr7 (181-325)||(27386894-27387036)
chr7 (168-272)||(26826045-26826150)
chr7 (173-266)||(21945725-21945816)
chr7 (191-272)||(23264068-23264150)
chr7 (206-269)||(40720832-40720895)
chr7 (180-290)||(1193683-1193796)
chr7 (158-271)||(30588489-30588603)
chr7 (158-207)||(4888411-4888460)
chr7 (289-322)||(31322034-31322067)
chr7 (158-219)||(31322115-31322176)
chr7 (158-207)||(45260509-45260558)
chr7 (169-225)||(25656815-25656870)
chr7 (158-198)||(32915903-32915943)
chr7 (229-268)||(48831202-48831242)
[»] chr8 (8 HSPs)
chr8 (161-272)||(21492730-21492844)
chr8 (183-257)||(24557411-24557485)
chr8 (163-272)||(6399883-6399993)
chr8 (163-270)||(26749556-26749664)
chr8 (203-270)||(34612563-34612631)
chr8 (155-233)||(13035097-13035174)
chr8 (163-221)||(34746431-34746489)
chr8 (183-216)||(1098467-1098500)
[»] chr6 (4 HSPs)
chr6 (155-251)||(27095956-27096051)
chr6 (163-270)||(24484838-24484946)
chr6 (192-254)||(2614455-2614517)
chr6 (158-223)||(2977884-2977949)
[»] scaffold0171 (1 HSPs)
scaffold0171 (158-270)||(17314-17427)
[»] scaffold0012 (1 HSPs)
scaffold0012 (158-207)||(208007-208056)
[»] scaffold0252 (1 HSPs)
scaffold0252 (159-207)||(10556-10604)
[»] scaffold0011 (1 HSPs)
scaffold0011 (275-322)||(13487-13537)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 2582629 - 2582289
Alignment:
Q  7 ataacttcgttcaattattcctctaaaatttgtgaaacctcaaaaactcttaattttgttaaacatttgtcaaagttgtcctccgtctattttcgtcgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2582629 ataacttcgttcaattattcctctaaaatttgtgaaacctcaaaaactcttaattttgttaaacatttgtcaaagttgtcctccgtctattttcgtcgtt 2582530  T
Q  107 tgatcttatgacgtggtcattaactacacacatgacgagttaagatctctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2582529 tgatcttatgacgtggtcattaactacacacatgacgagttaagatctctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaa 2582430  T
Q  207 ataattaatgatgatgagatttatttaatgataggacccaccacctatttttgtgtctatctcttttcacaatctccatttatt------catttatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||    
T  2582429 ataattaatgatgatgagatttatttaatgataggacccaccacctatttttgtgtctatctcttttcacaatctccatttattttaatccatttatttt 2582330  T
Q  301 aataaatggagaggatctcaacccacacatgacaaccccac 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2582329 aataaatggagaggatctcaacccacacatgacaaccccac 2582289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 35650274 - 35650437
Alignment:
Q  160 ctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttttt 258  Q
    ||||||||||||||||||  |||||||| ||| ||||||  ||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||||    
T  35650274 ctccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacctatttttt 35650373  T
Q  259 gtgtctatctcttttcacaatctccatttattcatttattttaataaatggagaggatctcaaccca 325  Q
    |||||||||| |||||  |||  | |  | | |||||||||||||||||||||||||||||||||||    
T  35650374 gtgtctatcttttttc-taattgcaa--tctccatttattttaataaatggagaggatctcaaccca 35650437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 3440823 - 3440958
Alignment:
Q  190 cacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta----tttttgtgtctatctcttttcacaatctccat 285  Q
    ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |||| |||    ||||||||||||||||||| |  | | |        
T  3440823 cacaaaaaatcttgaaaataattaatgataatgagacttatttaatgataggacctaccatctagtattttttgtgtctatctctttcctaattgt---a 3440919  T
Q  286 ttattcatttattttaataaatggagaggatctcaaccc 324  Q
     | | ||||||||||||||||||||||||||||||||||    
T  3440920 atctccatttattttaataaatggagaggatctcaaccc 3440958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 43222082 - 43222195
Alignment:
Q  160 ctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttttt 258  Q
    |||||||| |||||||  | |||||| ||||||| ||||| || |||||||||||||||| || |||  ||||||||||| ||||||||| ||| |||||    
T  43222082 ctccatttatttcattcagagagataaagacacataaaattttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctatttttt 43222181  T
Q  259 gtgtctatctcttt 272  Q
    ||||||||||||||    
T  43222182 gtgtctatctcttt 43222195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 9465743 - 9465861
Alignment:
Q  204 aaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt-tgtgtctatctcttttcacaatctccatttattcatttattttaa 302  Q
    |||||||||||||||| ||| ||| |||||||||||||| |||||||||||||| |||||||||||| ||||| |||  | |  | | |||||||||| |    
T  9465743 aaaataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctatctc-tttcataatggcaa--tctccatttattttta 9465839  T
Q  303 taaatggagaggatctcaaccc 324  Q
    |||||| |||||||||||||||    
T  9465840 taaatgaagaggatctcaaccc 9465861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 318
Target Start/End: Original strand, 31156501 - 31156658
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| |||||||||  |||||||||||||| | |   |||||| |||||||||||  ||||| | | ||||||||| || ||||||| || |||    
T  31156501 ttctccatttgtttcatttgaagagatatagacacatacacggttaaaattaattaatgatagtgagactcacttaatgata-gatccaccacttatttt 31156599  T
Q  257 ttgtgtctatctcttttcacaatctccatttattcatttattttaataaatggagaggatct 318  Q
    ||||||||||||||||||| ||| | ||| | |||||||||||| ||||||||||| |||||    
T  31156600 ttgtgtctatctcttttca-aat-tgcatat-ttcatttatttttataaatggagatgatct 31156658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 38283755 - 38283840
Alignment:
Q  180 gagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctat 266  Q
    ||||||||||||||||   ||||||||||||||||||||  | ||| ||||||||||||| ||||||||||||| ||| |||||||||    
T  38283755 gagatatagacacaaat--tcttaaaaataattaatgatagtcagacttatttaatgatatgacccaccacctactttatgtgtctat 38283840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 9125018 - 9124947
Alignment:
Q  187 agacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctattttt 258  Q
    |||||||||| || || |||||||||||||||  ||||| ||||||||| |||||| |||||||||||||||    
T  9125018 agacacaaaatatattgaaaataattaatgattgtgagacttatttaattataggatccaccacctattttt 9124947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 36290561 - 36290669
Alignment:
Q  163 catttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtg 261  Q
    ||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || |||  | ||| |||||||||||||||| || ||||||||    
T  36290561 catttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttgtg 36290660  T
Q  262 tctatctct 270  Q
    |||||||||    
T  36290661 tctatctct 36290669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 28043631 - 28043544
Alignment:
Q  163 catttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccac 250  Q
    ||||| ||| |||| | |||||| ||||||| ||||  | |||||||||||||||| |||||| ||| ||||||||||| ||||||||    
T  28043631 catttgttttatttagagagataaagacacataaaaagtaaaaaataattaatgataatgagacttacttaatgatagggcccaccac 28043544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 14733556 - 14733670
Alignment:
Q  205 aaataattaatgatgatgagatttatttaatgataggacccaccacctatttttgtgtctatctcttttcacaatctccatttattcatttattttaata 304  Q
    |||||||||| |||| || || | ||||||| ||| |||||||| | |||||||||||||||||| ||||  |||  | |  | |||||||||||| |||    
T  14733556 aaataattaacgatggtgggactcatttaataataagacccaccgcttatttttgtgtctatctc-tttcctaatgacaa--tcttcatttatttttata 14733652  T
Q  305 aatggagaggatctcaac 322  Q
    ||||||||||||||||||    
T  14733653 aatggagaggatctcaac 14733670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 23253859 - 23253774
Alignment:
Q  172 catttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    |||||||  ||||||||||||||||  |||| |||||||||||||||  ||| |  |||||||||| | ||||||||||| |||||    
T  23253859 catttggatagatatagacacaaaagttcttgaaaataattaatgatagtgaaacctatttaatgacatgacccaccacccatttt 23253774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 1923480 - 1923524
Alignment:
Q  193 aaaaaatcttaaaaataattaatgatgatgagatttatttaatga 237  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||    
T  1923480 aaaaaatcttaaaaataattaatgacgatgaaatctatttaatga 1923524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 43309051 - 43309123
Alignment:
Q  145 gttaagatctctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatg 219  Q
    ||||||||||||  ||||||||||||  |||||  |||||| ||||||| |||||||| |||| |||||||||||    
T  43309051 gttaagatctct--tctccatttcttcaatttgaagagataaagacacataaaatcttgaaaaaaattaatgatg 43309123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 26452512 - 26452586
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttattt 232  Q
    |||||| ||| |||||||| | |||||||| |||||| | | |||||||||||||||||||| || |||| ||||    
T  26452512 ttctccctttttttcattttgagagatataaacacaatataacttaaaaataattaatgatggtgggattcattt 26452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 30355218 - 30355268
Alignment:
Q  164 atttctttcatttggggagatatagacacaaaaaatcttaaaaataattaa 214  Q
    |||||||| |||||| |||||| ||||||||||||||||| | ||||||||    
T  30355218 atttctttaatttggagagataaagacacaaaaaatcttacatataattaa 30355268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 13032063 - 13032112
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    |||||||||||||  |||||| |||||| ||||||| |||||||||||||    
T  13032063 ttctccatttcttcaatttggagagataaagacacataaaatcttaaaaa 13032112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 39902359 - 39902408
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    |||||||||||||  |||||| |||||| ||||||| |||||||||||||    
T  39902359 ttctccatttcttcaatttggagagataaagacacataaaatcttaaaaa 39902408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 41073070 - 41072954
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||||||||| |||||||    
T  41073070 ttctccatttctttcatttagagagataaagacacaaaaaatcttaaaaataattaatgattgtgagatccatttaatgataggacccaccaactatttt 41072971  T
Q  258 -tgtgtctatctctttt 273  Q
     | ||||||| ||||||    
T  41072970 atatgtctatatctttt 41072954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 324
Target Start/End: Complemental strand, 373285 - 373121
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctat-tt 256  Q
    ||||||||||||| ||||| |  ||||| ||| ||||||||||||||||||||||||| ||| || |||| ||||||| ||| |||||||||||||| ||    
T  373285 ttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgacccaccacctatttt 373186  T
Q  257 ttgtgtctatctcttttcacaatctccatttattcatttattttaataaatggagaggatctcaaccc 324  Q
    |||||||||||| |||||| |||  | |  | | |||||||||| |||||||||||||||||||||||    
T  373185 ttgtgtctatct-ttttcataattgcaa--tctccatttatttttataaatggagaggatctcaaccc 373121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 30824122 - 30824180
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatg 216  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  30824122 ttctccatttcttccatttagagagatatagacacaaaaaatcttaaaaataattaatg 30824180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 374947 - 375060
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| | |||||||||||||| || |||    
T  374947 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggacccaccacttatttt 375046  T
Q  257 ttgtgtctatctct 270  Q
    ||||||||||||||    
T  375047 ttgtgtctatctct 375060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 23459967 - 23459854
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| || ||||  | |||||| ||||||| ||||  | ||||||||||||||||| || ||   ||||| ||||||||||| |||| || |||    
T  23459967 ttctccatttgttccattcagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccatttagtgataggacccgccacttatttt 23459868  T
Q  257 ttgtgtctatctct 270  Q
    ||||||||||||||    
T  23459867 ttgtgtctatctct 23459854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 23464286 - 23464251
Alignment:
Q  184 tatagacacaaaaaatcttaaaaataattaatgatg 219  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23464286 tatagacccaaaaaatcttaaaaataattaatgatg 23464251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 35315529 - 35315620
Alignment:
Q  231 ttaatgataggacccaccacctatt-tttgtgtctatctcttttcacaatctccatttattcatttattttaataaatggagaggatctcaaccc 324  Q
    ||||||||||||||||||||||||| ||||||| ||||||| | || ||| | ||| | | |||||||||| ||||||||||||||||| |||||    
T  35315529 ttaatgataggacccaccacctattgtttgtgtttatctctctcca-aat-tgcatct-tccatttatttttataaatggagaggatcttaaccc 35315620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 272
Target Start/End: Original strand, 38865233 - 38865346
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| |||||||||| |||||||||||||  |||||||| |||||||||||||||| ||  |  ||||||||| ||||||| ||||| || |||    
T  38865233 ttctccatttatttcatttggagagatatagacac--aaaatcttgaaaataattaatgatgctggaacctatttaatggtaggacctaccacatatttt 38865330  T
Q  257 ttgtgtctatctcttt 272  Q
    ||||||||||||||||    
T  38865331 ttgtgtctatctcttt 38865346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 3512414 - 3512281
Alignment:
Q  189 acacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttttgtgtctatctcttttcacaatctccattta 288  Q
    ||||||||||  ||||||||||||||| ||| ||  ||| |||||||||||| || |||||| | ||||| |||||||||| ||||  ||| | || ||     
T  3512414 acacaaaaaaatttaaaaataattaataatggtggaattcatttaatgatagaacacaccacttttttttttgtctatctc-tttcttaat-tgcaattc 3512317  T
Q  289 ttcatttattttaataaatggagaggatctcaaccc 324  Q
    | ||||||||  ||||||||||||||||||||||||    
T  3512316 tccatttattaaaataaatggagaggatctcaaccc 3512281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 34927484 - 34927553
Alignment:
Q  203 aaaaataattaatgatgatgagatttatttaatgataggacccaccacctat--ttttgtgtctatctct 270  Q
    |||||||||||||||||||||||  || |||||| |||||||||||| ||||  ||||||||||||||||    
T  34927484 aaaaataattaatgatgatgagacatacttaatggtaggacccaccatctattcttttgtgtctatctct 34927553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 56453919 - 56453828
Alignment:
Q  180 gagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctat-ttttgtgtctatctct 270  Q
    |||||| ||||||| ||||  | ||||||||| ||||||| || ||   | |||||||||||||||||||||||| ||||||||||||||||    
T  56453919 gagataaagacacataaaaagtaaaaaataatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctct 56453828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 52030812 - 52030754
Alignment:
Q  161 tccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatg 219  Q
    |||| ||||||||||||| |||||||||||| || |||  |||||||||||||||||||    
T  52030812 tccaattctttcatttggagagatatagacaaaataaaatttaaaaataattaatgatg 52030754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 4633762 - 4633825
Alignment:
Q  180 gagatatagacacaaaaaat-cttaaaaataattaatgatgatgagatttatttaatgatagga 242  Q
    |||||| ||||| ||||||| ||||||||||||||||||||||| ||  |||||||| ||||||    
T  4633762 gagataaagacataaaaaattcttaaaaataattaatgatgatgggacctatttaataatagga 4633825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 37002372 - 37002257
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| | |||||| ||||||| || |||    
T  37002372 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggatccaccacttatttt 37002273  T
Q  257 ttgtgtctatctcttt 272  Q
    ||||||||||||||||    
T  37002272 ttgtgtctatctcttt 37002257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 5524404 - 5524514
Alignment:
Q  161 tccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttg 259  Q
    ||||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| |||||||||||||||| || |||||     
T  5524404 tccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttactgataggacccaccacttatttttta 5524503  T
Q  260 tgtctatctct 270  Q
    |||||||||||    
T  5524504 tgtctatctct 5524514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 54588829 - 54588875
Alignment:
Q  173 atttggggagatatagacacaaaaaatcttaaaaataattaatgatg 219  Q
    |||||| |||||| | ||||||||||||||| |||||||||||||||    
T  54588829 atttggagagataaaaacacaaaaaatcttataaataattaatgatg 54588875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 324
Target Start/End: Complemental strand, 28229515 - 28229359
Alignment:
Q  161 tccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctat-ttttg 259  Q
    |||||||||| ||||| | |||||||||||||||||||     |||| ||||||||||| ||||| | ||||||||||||||| |||||||||| |||||    
T  28229515 tccatttcttccatttagagagatatagacacaaaaaa-----aaaaaaattaatgatggtgagactcatttaatgataggactcaccacctattttttg 28229421  T
Q  260 tgtctatctcttttcacaatctccatttattcatttattttaataaatggagaggatctcaaccc 324  Q
    ||||||| ||||| |  | |   ||    | ||||||||||||||||||||||||||||||||||    
T  28229420 tgtctatatctttcctaattgcaca---ctccatttattttaataaatggagaggatctcaaccc 28229359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 33338288 - 33338193
Alignment:
Q  161 tccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    |||||||||| | ||||  |||||| ||||||||||| |||| |||||| ||||||||||||||| | |||||||||||||||||||| ||||||||    
T  33338288 tccatttcttccgtttgaagagataaagacacaaaaa-tcttgaaaatagttaatgatgatgagactcatttaatgataggacccacctcctatttt 33338193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 33979910 - 33980005
Alignment:
Q  180 gagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctatctcttttc 274  Q
    |||||||| | |||| |||||||||||||||||||||||  ||||| ||||||||||||||||  |||||  || |||||||||||||||||||||    
T  33979910 gagatatatatacaataaatcttaaaaataattaatgatagtgagacttatttaatgataggattcaccatttattttttgtgtctatctcttttc 33980005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 48950597 - 48950663
Alignment:
Q  191 acaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    |||||||||||| |||||||||||||||| ||||| | |||||||||||||| ||||||||||||||    
T  48950597 acaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggatccaccacctatttt 48950663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 32577476 - 32577570
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta 253  Q
    |||||||||||||  |||||| |||||| ||||||||||| |||| |||| ||||||||||| ||  | | |||||||||||||||||||||||||    
T  32577476 ttctccatttcttctatttggagagataaagacacaaaaa-tcttgaaaaaaattaatgatggtggaactcatttaatgataggacccaccaccta 32577570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 49679391 - 49679278
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| |||||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   ||||| ||||||||||| |||| || |||    
T  49679391 ttctccatttgtttcatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccatttagtgataggacccgccacttatttt 49679292  T
Q  257 ttgtgtctatctct 270  Q
    ||||||||||||||    
T  49679291 ttgtgtctatctct 49679278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 20485727 - 20485812
Alignment:
Q  172 catttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    ||||||| |||||||||||||||||  |||  |||||||||||||||  ||| |  |||||||||| | ||||||||||| |||||    
T  20485727 catttggagagatatagacacaaaagttctagaaaataattaatgatagtgaaacctatttaatgacacgacccaccacccatttt 20485812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 31523789 - 31523676
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| | |||||||||||||| || |||    
T  31523789 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggacccaccacttatttt 31523690  T
Q  257 ttgtgtctatctct 270  Q
    ||||||||||||||    
T  31523689 ttgtgtctatctct 31523676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 42613034 - 42613152
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| ||  |||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| |||||||||||||||| || |||    
T  42613034 ttctccatttgttctatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccaccacttatttt 42613133  T
Q  257 ttgtgtctatctcttttca 275  Q
    || ||||||||||| ||||    
T  42613134 ttttgtctatctctcttca 42613152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 43720078 - 43720029
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    |||||||||||||  |||||| |||||| ||||||| |||||||||||||    
T  43720078 ttctccatttcttcaatttggagagataaagacacataaaatcttaaaaa 43720029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 778943 - 778895
Alignment:
Q  165 tttctttcatttggggagatatagacacaaaaaatcttaaaaataatta 213  Q
    |||||| ||||||  |||||| ||| |||||||||||||||||||||||    
T  778943 tttcttccatttgtagagataaagaaacaaaaaatcttaaaaataatta 778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 36700942 - 36700842
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    ||||| |||||||| |||||| |||||| ||||||||||||| || |||||||||||||||| ||| || ||||||||||||| | |||||| | |||||    
T  36700942 ttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgatagaatccaccatcaatttt 36700843  T
Q  258 t 258  Q
    |    
T  36700842 t 36700842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 36717046 - 36716946
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    ||||| |||||||| |||||| |||||| ||||||||||||| || |||||||||||||||| ||| || ||||||||||||| | |||||| | |||||    
T  36717046 ttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgatagaatccaccatcaatttt 36716947  T
Q  258 t 258  Q
    |    
T  36716946 t 36716946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 24413402 - 24413291
Alignment:
Q  159 tctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccacca-cctatttt 257  Q
    |||| ||||||| ||||| | | ||||  ||||||||||||||| |||||||||||||||| || ||   ||||||||||||||||||||| ||  ||||    
T  24413402 tctcaatttcttccattttgagggataaggacacaaaaaatcttgaaaataattaatgatggtgggacccatttaatgataggacccaccatccattttt 24413303  T
Q  258 tgtgtctatctc 269  Q
    ||||||||||||    
T  24413302 tgtgtctatctc 24413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 1358489 - 1358398
Alignment:
Q  181 agatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctatctcttt 272  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||| |||||  |||||||||  ||| ||||| ||||||||||||| |||||    
T  1358489 agatataaacacaaaaaatcttaaatataattaatgatggtgagacttattcgatgatagga-tcacaacctattttttgtgtctatttcttt 1358398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 32887910 - 32887871
Alignment:
Q  159 tctccatttctttcatttggggagatatagacacaaaaaa 198  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  32887910 tctccatttctttcatttggagagatatagactcaaaaaa 32887871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 52280138 - 52280047
Alignment:
Q  180 gagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctatctct 270  Q
    |||||| ||||||| ||||  | ||||||||||||||||| || |||  | ||| |||||||||||||||| || ||||| |||||||||||    
T  52280138 gagataaagacacataaaaagtaaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctct 52280047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 26768894 - 26768947
Alignment:
Q  203 aaaaataattaatgatgatgagatttatttaatgataggacccaccacctattt 256  Q
    ||||||||||||||||| ||||| | | |||||||||| ||||||||| |||||    
T  26768894 aaaaataattaatgatggtgagactcacttaatgatagaacccaccacttattt 26768947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 50484330 - 50484379
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    |||||||||||||| |||||| |||||| ||||||| |||||||| ||||    
T  50484330 ttctccatttctttaatttggagagataaagacacataaaatcttgaaaa 50484379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 30760374 - 30760262
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    ||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||| ||  | | ||| ||||||| ||  ||||||   ||||    
T  30760374 ttctccatttctttcatttgtagagataaagacataaaaaatcttaaaaataattaatgatggtgcaactcattcaatgataagattcaccac--ttttt 30760277  T
Q  258 tgtgtctatctcttt 272  Q
    |||||||||||||||    
T  30760276 tgtgtctatctcttt 30760262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 20400029 - 20400121
Alignment:
Q  181 agatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctattt-ttgtgtctatctcttt 272  Q
    ||||| ||||| ||||||||||||||||||||||||||  || || | ||||||||||| ||||||||||  |||| ||||||||||||||||    
T  20400029 agataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagacccaccactaatttgttgtgtctatctcttt 20400121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 676112 - 676029
Alignment:
Q  189 acacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctatctctt 271  Q
    |||||||||||||| |||||||||||||||| ||||| | ||||||||||||||  |||||| || ||||||||| ||||||||    
T  676112 acacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgtttatctctt 676029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 322
Target Start/End: Complemental strand, 18118623 - 18118455
Alignment:
Q  156 tattctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatt 255  Q
    |||||||||||||||  ||||    ||||| ||| | |||||||||| |||||||||||||||| || || | |||||||||||||| |||||||  |||    
T  18118623 tattctccatttcttctatttaaatagataaagatataaaaaatcttgaaaataattaatgatggtgtgactcatttaatgataggatccaccactaatt 18118524  T
Q  256 t-ttgtgtctatctcttttcacaat--ctccatttattcatttattttaataaatggagaggatctcaac 322  Q
    | ||| | ||||||| ||||| |||  |   ||||||| ||||||||| |||||||||||||||||||||    
T  18118523 tgttgggactatctc-tttcataatgacaatatttatttatttatttttataaatggagaggatctcaac 18118455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 27387036 - 27386894
Alignment:
Q  181 agatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctattttt-gtgtctatctcttttcacaat 279  Q
    |||||||||||||||||||||| ||||||||||||  || |   | | ||||||||||||||| |||| | ||||||| |||||||||||||| || |||    
T  27387036 agatatagacacaaaaaatcttgaaaataattaatagtggtagaactcatttaatgataggacacaccgcttattttttgtgtctatctcttt-cataat 27386938  T
Q  280 ctccatttattcatttattttaataaatggagaggatctcaaccca 325  Q
      | || |   |||||||||| ||||||||||||||||||||||||    
T  27386937 aacaatctc--catttatttttataaatggagaggatctcaaccca 27386894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 26826150 - 26826045
Alignment:
Q  168 ctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt-tgtgtctat 266  Q
    ||||||||||| |||||| ||| ||||||  | ||||||||||||||||||| | | | | ||||||||||||||||||| ||  ||||| | |||||||    
T  26826150 ctttcatttggagagataaagatacaaaagttattaaaaataattaatgatggttaaactcatttaatgataggacccactactaattttatatgtctat 26826051  T
Q  267 ctcttt 272  Q
    ||||||    
T  26826050 ctcttt 26826045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 21945816 - 21945725
Alignment:
Q  173 atttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt-tgtgtctat 266  Q
    |||||| |||||||||||||||||| |||| || ||   |||||||  | |||| |||||||||||| ||||||||||||||||| |||||||||    
T  21945816 atttggagagatatagacacaaaaattcttgaatat---taatgatagtcagatctatttaatgatatgacccaccacctattttatgtgtctat 21945725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 23264150 - 23264068
Alignment:
Q  191 acaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctatctcttt 272  Q
    ||||||||||||||||||||||| |||||| | || | ||||||||||| ||| || |||| | ||||||||| |||||||||    
T  23264150 acaaaaaatcttaaaaataattattgatgaggggactcatttaatgatatgacacatcaccaattttttgtgtttatctcttt 23264068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 40720832 - 40720895
Alignment:
Q  206 aataattaatgatgatgagatttatttaatgataggacccaccacctatttttgtgtctatctc 269  Q
    |||||||||||||||||||||| | |||||||||| | |||| ||||| |||| ||| ||||||    
T  40720832 aataattaatgatgatgagattcacttaatgatagaatccacaacctaattttttgtgtatctc 40720895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 1193796 - 1193683
Alignment:
Q  180 gagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctat-ttttgtgtctatctctt--ttcac 276  Q
    |||||| |||||||| |||  || ||||||||||||  || | ||| | ||||||||| | || ||||||||||| |||||||||||||||||  || ||    
T  1193796 gagataaagacacaataaaaatttaaaataattaatcgtggttagactcatttaatgacatgagccaccacctattttttgtgtctatctctttcttgac 1193697  T
Q  277 aatctccatttatt 290  Q
    ||| ||||||||||    
T  1193696 aatatccatttatt 1193683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 30588489 - 30588603
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||||||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| |||||||||||  ||| || |||    
T  30588489 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccgtcacttatttt 30588588  T
Q  257 ttgtgtctatctctt 271  Q
    |||||||||||||||    
T  30588589 ttgtgtctatctctt 30588603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 4888411 - 4888460
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    ||||| ||||||| ||||||| |||||| ||||||| |||||||||||||    
T  4888411 ttctcaatttcttccatttggagagataaagacacataaaatcttaaaaa 4888460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 31322067 - 31322034
Alignment:
Q  289 ttcatttattttaataaatggagaggatctcaac 322  Q
    |||||||||||| |||||||||||||||||||||    
T  31322067 ttcatttatttttataaatggagaggatctcaac 31322034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 31322176 - 31322115
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatg 219  Q
    |||| |||||||| ||||||| | |||| | |||||||||||| | ||||||||||||||||    
T  31322176 ttcttcatttcttccatttggagtgataaaaacacaaaaaatccttaaaataattaatgatg 31322115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 45260558 - 45260509
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    |||||||||||||  |||||| |||||| ||||||| |||||||||||||    
T  45260558 ttctccatttcttcaatttggagagataaagacacataaaatcttaaaaa 45260509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 25656815 - 25656870
Alignment:
Q  169 tttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgaga 225  Q
    |||||||||  |||||||| |||||| |||| ||||||||||||||||||| |||||    
T  25656815 tttcatttgaagagatataaacacaataaat-ttaaaaataattaatgatggtgaga 25656870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 32915903 - 32915943
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaa 198  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  32915903 ttctccatttcttccatttggagagataaagacacaaaaaa 32915943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 48831242 - 48831202
Alignment:
Q  229 atttaatgataggacccaccacctat-ttttgtgtctatct 268  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  48831242 atttaatgataggacacaccacctattttttgtgtctatct 48831202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 21492730 - 21492844
Alignment:
Q  161 tccatttctttcatttggggagatatagacaca-aaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta--tttt 257  Q
    |||||||||| ||||||| |||||| ||||||| ||||||||| ||||||| |||||||| || ||  |||||||| |||| |  |||||||||  ||||    
T  21492730 tccatttcttccatttggagagataaagacacacaaaaatcttgaaaataagtaatgatggtgggacctatttaataatagtattcaccacctatttttt 21492829  T
Q  258 tgtgtctatctcttt 272  Q
    |||||||||||||||    
T  21492830 tgtgtctatctcttt 21492844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 24557411 - 24557485
Alignment:
Q  183 atatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt 257  Q
    ||||||||||||||| |||| |||||||||||||||  | |||  |||||||||||| |||||| ||||||||||    
T  24557411 atatagacacaaaaattcttgaaaataattaatgatagtcagacgtatttaatgatatgacccatcacctatttt 24557485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 6399883 - 6399993
Alignment:
Q  163 catttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtg 261  Q
    ||||| |||||||||| |||||| | ||||||||||  | |||||||||||||||| ||| |||  | ||  | ||| ||||||||| ||| ||||||||    
T  6399883 catttgtttcatttggagagataaaaacacaaaaaaagtaaaaaataattaatgataatgggatccacttggtaataagacccaccatctattttttgtg 6399982  T
Q  262 tctatctcttt 272  Q
    |||||||||||    
T  6399983 tctatctcttt 6399993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 26749664 - 26749556
Alignment:
Q  163 catttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtg 261  Q
    ||||| |||||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| |||||||||||| ||| || ||||||||    
T  26749664 catttgtttcatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtg 26749565  T
Q  262 tctatctct 270  Q
    |||||||||    
T  26749564 tctatctct 26749556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 34612563 - 34612631
Alignment:
Q  203 aaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctatctct 270  Q
    ||||||||||||||||| |||||   | ||| |||||||||||||||| || |||||||||||||||||    
T  34612563 aaaaataattaatgatggtgagacccacttagtgataggacccaccacttattttttgtgtctatctct 34612631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 13035097 - 13035174
Alignment:
Q  155 ctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttattta 233  Q
    ||||| ||||||||||  |||| |  ||||| ||||||||||| |||| |||||||||||||||| ||||||| |||||    
T  13035097 ctattttccatttcttctatttagaaagataaagacacaaaaa-tcttgaaaataattaatgatggtgagattcattta 13035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 34746489 - 34746431
Alignment:
Q  163 catttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgat 221  Q
    |||||||| ||||||  ||||||||||||||| |||  |||||||| ||||||||||||    
T  34746489 catttcttccatttgaagagatatagacacaataaaatttaaaaatgattaatgatgat 34746431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 1098500 - 1098467
Alignment:
Q  183 atatagacacaaaaaatcttaaaaataattaatg 216  Q
    |||||||||||||||||||| |||||||||||||    
T  1098500 atatagacacaaaaaatcttgaaaataattaatg 1098467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 27095956 - 27096051
Alignment:
Q  155 ctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacc 251  Q
    |||||||||||||||||||||| | |||||| | ||| |||   | || |||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  27095956 ctattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagactcatttaatgataggacccatcacc 27096051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 24484838 - 24484946
Alignment:
Q  163 catttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtg 261  Q
    ||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| |||||||||||||||| || ||||||||    
T  24484838 catttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccaccacttattttttgtg 24484937  T
Q  262 tctatctct 270  Q
    |||||||||    
T  24484938 tctatctct 24484946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 2614517 - 2614455
Alignment:
Q  192 caaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacctat 254  Q
    |||||||||||||||||||||||||||| || || | ||||||||| || | | |||||||||    
T  2614517 caaaaaatcttaaaaataattaatgatggtgtgactcatttaatgacagaatcaaccacctat 2614455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 2977884 - 2977949
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatga 223  Q
    |||| |||||||||||||||| |||||| | ||||  ||||  |||||||||||||||||| ||||    
T  2977884 ttctacatttctttcatttggagagataaaaacacgtaaaaatttaaaaataattaatgataatga 2977949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 17427 - 17314
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-ttt 256  Q
    |||| ||||| || ||||| | |||||| ||||||| ||||  | ||||||||||||||||| || ||   | ||| |||||||||||| ||| || |||    
T  17427 ttcttcatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccagcacttatttt 17328  T
Q  257 ttgtgtctatctct 270  Q
    ||||||||||||||    
T  17327 ttgtgtctatctct 17314  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 208007 - 208056
Alignment:
Q  158 ttctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    |||||||||||||  |||||| |||||| ||||||| |||||||||||||    
T  208007 ttctccatttcttcaatttggagagataaagacacataaaatcttaaaaa 208056  T

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Target: scaffold0252 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 10604 - 10556
Alignment:
Q  159 tctccatttctttcatttggggagatatagacacaaaaaatcttaaaaa 207  Q
    |||||||||||||||||||  |||||| | | |||||||||||||||||    
T  10604 tctccatttctttcatttgtagagataaaaatacaaaaaatcttaaaaa 10556  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 13537 - 13487
Alignment:
Q  275 acaatctccatttatt---catttattttaataaatggagaggatctcaac 322  Q
    ||||||||||||||||   |||||||||| ||||||||||| |||||||||    
T  13537 acaatctccatttatttttcatttattttcataaatggagacgatctcaac 13487  T

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