View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5612-Insertion-7 (Length: 313)
Name: NF5612-Insertion-7
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5612-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 24405018 - 24405323
Alignment:
| Q |
8 |
gacttagtcaaatcagaagacactccaaatagtagacaagttgtgtccgctgaagttgaagcttcaaatattgacttaaatttgaaggatgttggacgtg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24405018 |
gacttagtcaaatcagaagacactccaaatagtagacaagttgtgtccgctgaagttgaagcttcaaatattgacttaaatttgaaggatgttggacgtg |
24405117 |
T |
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| Q |
108 |
agttagtacctgttgtaactgatgttacaaaacaatctttaccttctgccattcttcacaatgaactggaagacgatcttccagaatacgaatttggaac |
207 |
Q |
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| T |
24405118 |
agttagtacctgttgtaactgatgttacaaaacaatctttaccttctgccattcttcacaatgaactggaagacgatcttccagaatacgaatttggaac |
24405217 |
T |
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| Q |
208 |
ttcgcagaagagaagattggatgatgttacaaaacaatctttatcttctgttattcttcaagatgagctggatgacgatcttccagaatatgattttgga |
307 |
Q |
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| T |
24405218 |
ttcgcagaagagaagattggatgatgttacaaaacaatctttatcttctgttattcttcaagatgagctggatgacgatcttccagaatatgattttgga |
24405317 |
T |
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| Q |
308 |
acttca |
313 |
Q |
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|||||| |
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| T |
24405318 |
acttca |
24405323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 24405402 - 24405441
Alignment:
| Q |
170 |
gaactggaagacgatcttccagaatacgaatttggaactt |
209 |
Q |
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| T |
24405402 |
gaactggaagacgatcttccaaaatatgaatttggaactt |
24405441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 42303643 - 42303959
Alignment:
| Q |
17 |
aaatcagaagacactccaaatagtagacaagttgtgtccgctgaagttgaagcttcaaatattgacttaaatttgaaggatgttggacgtgagttagtac |
116 |
Q |
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| T |
42303643 |
aaatcagaagacactcaagatatcagataagttgtatctgttaaagttgaaacatcaaatattgacttaaattcgaagcatgttggacttgtgtt-gtac |
42303741 |
T |
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| Q |
117 |
ctgttgtaactgatgttacaaaacaatctttac-cttctgccattcttcacaatgaactggaagacgatcttccagaatacgaatttggaact------- |
208 |
Q |
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| T |
42303742 |
ctgttgtaattgttgttacaaaacaatctttagtcttctgctattcttcaaaaggaaccagaaaac-atcttctagaatgcgaatttgaaacttcaacta |
42303840 |
T |
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| Q |
209 |
--------------tcgcagaagagaagattggatgatgttacaaaacaatctttatcttctgttattcttcaagatgagctggatgacgatcttccaga |
294 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | |||||||| |||||||||| ||| |
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| T |
42303841 |
caagttgtaaaacttcgcagaagagaagattggatgttgttacaaaacaatttttatcttctgttattcttcaaaaggagctggaagacgatcttctaga |
42303940 |
T |
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| Q |
295 |
atatgattttggaacttca |
313 |
Q |
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|| ||| |||||||||||| |
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| T |
42303941 |
atttgaatttggaacttca |
42303959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 42303111 - 42303012
Alignment:
| Q |
215 |
aagagaagattggatgatgttacaaaacaatctttatcttctgttattcttcaagatgagct-ggatgacgatcttccagaatatgattttggaacttca |
313 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||| |||||||||| | ||| | ||| |||||||||||| ||| ||| |||||||||||| |
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| T |
42303111 |
aagagaagattggatgttgttacaaaccaatctttatcttctgctattcttcaaaaggagttgggaagacgatcttccataatttgaatttggaacttca |
42303012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 42303304 - 42303137
Alignment:
| Q |
43 |
acaagttgtgtccgctgaagttgaagcttcaaatattgacttaaatttgaaggatgttggacgtgagttagtacctgttgtaactgatgttacaaaacaa |
142 |
Q |
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||||||||| || ||| |||||||| | ||| |||||||||||| | |||| ||||||||| || |||||| | ||| |||||| ||||||||||||| |
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| T |
42303304 |
acaagttgtatctgctaaagttgaaacatcatatattgacttaatatcgaagcatgttggacctgtgttagttcttgtagtaactattgttacaaaacaa |
42303205 |
T |
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| Q |
143 |
tctttaccttctgccattcttcacaatgaactggaagacgatcttccagaatacgaatttggaacttc |
210 |
Q |
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| T |
42303204 |
tctttaccttatgttattcttgaaaaggaagcagaaggcgatcttccagaattcgaattcgaaacttc |
42303137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 42302985 - 42302911
Alignment:
| Q |
222 |
gattggatgatgttacaaaacaatctttatcttctgttattcttcaagatgagctggatgacgatcttccagaat |
296 |
Q |
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||||||||| |||| ||||||||||||||||||||| |||||||| | | || ||||| || |||||||| |||| |
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| T |
42302985 |
gattggatgttgttccaaaacaatctttatcttctgctattcttcgaaaggaactggaagatgatcttcctgaat |
42302911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 42303981 - 42304035
Alignment:
| Q |
212 |
cagaagagaagattggatgatgttacaaaacaatctttatcttctgttattcttc |
266 |
Q |
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| T |
42303981 |
cagaagagaagattggatgttattacaaaacaatcttcatcttttgctattcttc |
42304035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 42303094 - 42303013
Alignment:
| Q |
130 |
tgttacaaaacaatctttaccttctgccattcttcacaatgaactgg-aagacgatcttccagaatacgaatttggaacttc |
210 |
Q |
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||||||||| ||||||||| ||||||| |||||||| || || ||| |||||||||||||| ||| |||||||||||||| |
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| T |
42303094 |
tgttacaaaccaatctttatcttctgctattcttcaaaaggagttgggaagacgatcttccataatttgaatttggaacttc |
42303013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 42302975 - 42302911
Alignment:
| Q |
130 |
tgttacaaaacaatctttaccttctgccattcttcacaatgaactggaagacgatcttccagaat |
194 |
Q |
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|||| |||||||||||||| ||||||| ||||||| || ||||||||||| |||||||| |||| |
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| T |
42302975 |
tgttccaaaacaatctttatcttctgctattcttcgaaaggaactggaagatgatcttcctgaat |
42302911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 10506407 - 10506490
Alignment:
| Q |
85 |
aaatttgaaggatgttggacgtgagttagtacctgttgtaact--ga-tgttacaaaacaatctttaccttctgccattcttca |
165 |
Q |
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|||||||||| ||||| ||| || ||||||||||| ||||||| || |||||||||||||||||||||||||| |||||||| |
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| T |
10506407 |
aaatttgaagtatgttcgacctgtgttagtacctgatgtaactacgactgttacaaaacaatctttaccttctgttattcttca |
10506490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 10506455 - 10506491
Alignment:
| Q |
232 |
tgttacaaaacaatctttatcttctgttattcttcaa |
268 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
10506455 |
tgttacaaaacaatctttaccttctgttattcttcaa |
10506491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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