View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5612_low_1 (Length: 558)
Name: NF5612_low_1
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5612_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 387
Target Start/End: Complemental strand, 7278977 - 7278608
Alignment:
| Q |
21 |
atcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
120 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278977 |
atcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
7278878 |
T |
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| Q |
121 |
aagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggcgaggtgaattg |
220 |
Q |
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| T |
7278877 |
aagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggtgaggtgaattg |
7278778 |
T |
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| Q |
221 |
tatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaa- |
319 |
Q |
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| T |
7278777 |
tatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaa |
7278678 |
T |
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| Q |
320 |
--agaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
387 |
Q |
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| T |
7278677 |
gaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
7278608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 387
Target Start/End: Original strand, 7374862 - 7375231
Alignment:
| Q |
21 |
atcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
120 |
Q |
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| T |
7374862 |
atcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
7374961 |
T |
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| Q |
121 |
aagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggcgaggtgaattg |
220 |
Q |
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| T |
7374962 |
aagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggcgaggtgaattg |
7375061 |
T |
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| Q |
221 |
tatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtga-- |
318 |
Q |
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| T |
7375062 |
tatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaa |
7375161 |
T |
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| Q |
319 |
-aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
387 |
Q |
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| T |
7375162 |
gaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
7375231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 446 - 537
Target Start/End: Complemental strand, 7278549 - 7278458
Alignment:
| Q |
446 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtt |
537 |
Q |
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| T |
7278549 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtt |
7278458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 446 - 537
Target Start/End: Original strand, 7375290 - 7375381
Alignment:
| Q |
446 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtt |
537 |
Q |
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| T |
7375290 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtt |
7375381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
| Q |
222 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
272 |
Q |
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|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
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| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7278543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
| Q |
222 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
272 |
Q |
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|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
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| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7375296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
| Q |
149 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
205 |
Q |
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||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
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| T |
7278576 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7278520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
| Q |
149 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
205 |
Q |
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||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
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| T |
7375263 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7375319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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