View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5612_low_2 (Length: 367)
Name: NF5612_low_2
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5612_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 55 - 345
Target Start/End: Original strand, 34677814 - 34678104
Alignment:
| Q |
55 |
tagaagaaactatagcagtgttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
154 |
Q |
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| T |
34677814 |
tagaagaaactatagcagagttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
34677913 |
T |
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| Q |
155 |
ttttcatgaaaacagaacaacaaaaagctaagccgttattttgattattctagatggaactatacgtagtgttatgacttatgaatcttcaagttaaact |
254 |
Q |
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| T |
34677914 |
ttttcatgaaaacagaacaacaaaaagctaagccgttattttgattattctaggtggaactatacgtagtgttatgacttatgaatcttcaagttaaact |
34678013 |
T |
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| Q |
255 |
gtttaacttgtgtgcaattgaatcatcgatcacatcatgaaataatccttattttctacgatgatttgatgagtcttgtatatgaacattc |
345 |
Q |
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| T |
34678014 |
gtttaacttgtgtgcaattgaatcatcgatcacatcatgaaataatccttattttctacgatgatttgatgactcttgtatatgaacattc |
34678104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34677749 - 34677780
Alignment:
| Q |
1 |
agagttagggttgttttatctatgattagaat |
32 |
Q |
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| T |
34677749 |
agagttagggttgttttatctatgattagaat |
34677780 |
T |
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