View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5613-Insertion-2 (Length: 745)
Name: NF5613-Insertion-2
Description: NF5613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5613-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 328 - 726
Target Start/End: Complemental strand, 10195428 - 10195031
Alignment:
| Q |
328 |
aaatttgtaataatct-aaaccatatttaaacacaatttgaagtatataatatatatgttagcgatgatcacnnnnnnnnnnnnnaatgtaggtgtgaag |
426 |
Q |
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| T |
10195428 |
aaatttgtaataatcttaaaccatatttaaacacaatttgaactatataatatatatgttagcgatgatcacttttttttttt--aatgtaggtgtgaag |
10195331 |
T |
|
| Q |
427 |
gaagtagaggtgaatagagagcaaagcaaggtaaccgtgactgggagtgtggatagaaataaggtcctaaggaaggtgcagagcacaggaaaaagagcaa |
526 |
Q |
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| T |
10195330 |
gaagtagaggtgaatagagagcaaagcaaggtaaccgtgactgggaatgtggatagaaataaggtcctaaggaaggtgcagagcacaggaaaaagagcaa |
10195231 |
T |
|
| Q |
527 |
agttttggccatatgttgaagctaacttggtggcatatccctacataacacaagcatatgcaaaaaatgcaccttctggatatgtgaaaaacactgaatt |
626 |
Q |
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| T |
10195230 |
agttttggccatatgttgaagctaacttggtggcatatccctacataacacaagcatatgcaaaaaatgcaccttctggatatgtgaaaaacactgaatt |
10195131 |
T |
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| Q |
627 |
agcaataccaaacccaaatggaacagatgataagatcacttccttcttcagtgatgataaccctaatgcatgttcaatcatgtgaaccaattttagtcat |
726 |
Q |
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| T |
10195130 |
agcaataccaaacccaaatggaacagatgataagatcacttccttctttagtgatgataaccctaatgcatgttcaatcatgtgaaccaattttagtcat |
10195031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 10195831 - 10195496
Alignment:
| Q |
8 |
ggttctatattttatacggtgtaaccatacttaaaaatcatttgaaagttgaaactctatcgaccaacggtgctccttaa----aagtagatgttcacaa |
103 |
Q |
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| T |
10195831 |
ggttctatattttatacggtgtaaccatacttaaaaatcacttgaaagttgaaactctatcgaccaacggtgctcctcgatcgaaagtagatgttcacaa |
10195732 |
T |
|
| Q |
104 |
tcttcatcgttcttatagttgagatagtgacatgatttgtgtctgttacttttgttattttcgactcgagaccaattatcacggtctcagtcataaaaac |
203 |
Q |
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| T |
10195731 |
tcttcatcgttcttatagttgagatagtgacatgatctgtgtctgttacttttgttattttcgactcgagaccaattatcacggtctcagtcataaaaac |
10195632 |
T |
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| Q |
204 |
cgagttaaccatagtttctacttagaaat----atgttcttggcgtttatatttcaaacgattttcaagcatataggtttacgatggaacgtctatcaaa |
299 |
Q |
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| T |
10195631 |
cgagttaaccatagtttctacttagaaatagtgatgttcttgtcgtttatatttcaaacgattttcaagcatataggtttacgatggaacgtctatcaaa |
10195532 |
T |
|
| Q |
300 |
gcagttcaccctacaatttgctcttaaaaaatttgt |
335 |
Q |
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| T |
10195531 |
gcagttcaccgtacaatttgctcttaaaaaatttgt |
10195496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 618
Target Start/End: Original strand, 10652831 - 10652944
Alignment:
| Q |
505 |
cagagcacaggaaaaagagcaaagttttggccatatgttgaagctaacttggtggcatatccctacataacacaagcatatgcaaaaaatgcaccttctg |
604 |
Q |
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|||| ||| |||||||||||| |||||||||||||| || | ||||||||||| ||||| || ||| | ||||| |||| || || |||||||||| |
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| T |
10652831 |
cagaacactggaaaaagagcagagttttggccatatattccatacaacttggtggcttatccttatatatctcaagcttatgacaagaaagcaccttctg |
10652930 |
T |
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| Q |
605 |
gatatgtgaaaaac |
618 |
Q |
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| T |
10652931 |
gttatgtgaaaaac |
10652944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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