View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5613-Insertion-4 (Length: 390)
Name: NF5613-Insertion-4
Description: NF5613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5613-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 40130458 - 40130076
Alignment:
| Q |
8 |
tgttgtgtattgaatatgcagatctttcatgggaaacagattgtcagggccattccctacagttctcaccaatattacaaccctcaaaaacttgtatgtt |
107 |
Q |
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| T |
40130458 |
tgttgtgtattgaatatgcagatctttcatgggaaacagattttcagggccattccctacagttctcaccaatattacaaccctcaaaaacttgtatgtt |
40130359 |
T |
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| Q |
108 |
atattatttctttattttcaaacatgagtaaatcctcactttggtcctcgagattataaacatcgaacataaagataaatccaatgtttttaaaagaaaa |
207 |
Q |
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| T |
40130358 |
atattatttctttattttcaaacatgagtaaatcctcactttggtcctcgagtttataaacgtcgaacataaagataaatccaatgtttttaaaagaaaa |
40130259 |
T |
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| Q |
208 |
tcaggaaagaaaaaagggattatctcaactgctttgtttaaataacataatacttgtatgaatgttacagaagtattgaaggaaatcaattttcaggctt |
307 |
Q |
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| T |
40130258 |
tcaggaaagaaaaaagggattatctcaactgctttgtttaaataacataatacttgtatgaatgttacagaagtattgaaggaaatcaattttcaggctt |
40130159 |
T |
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| Q |
308 |
tattcctgaagacatagggaagctgatcaacttagaaaaactgtaattcttctgaaactcccgtcttcttattgtaatcatag |
390 |
Q |
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| T |
40130158 |
tattcctgaagacatagggaagctgatcaacttagaaaaactgtaattcttctgaaactcccgtcttcttattgtaatcatag |
40130076 |
T |
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