View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5613_high_4 (Length: 235)
Name: NF5613_high_4
Description: NF5613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5613_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 54980078 - 54979858
Alignment:
| Q |
5 |
gcctcctcatttggcattcaaaacatgtctaatatttagccttatcaaattggcatcataactaatgttttattcaaccactatagctgcacctcagatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54980078 |
gcctcctcatttggcattcaaaacatgtctaatatttagccttatcaaattgacatcataactaatgttttatgcaaccactatagctgcacctcagatt |
54979979 |
T |
|
| Q |
105 |
ttggcctaatgaaggttgacaataaatagaggatcctttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatggtaagtctcatgtttatca |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54979978 |
ttggcctaatgaagattgacaataaatagaggatcctttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatggtaagtctcatgtttatca |
54979879 |
T |
|
| Q |
205 |
tactacaagtttcaagaatta |
225 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
54979878 |
tactacaagtttcaagaatta |
54979858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 54971597 - 54971476
Alignment:
| Q |
86 |
tatagctgcacctcagattttggcctaatgaaggttgacaataaatagaggatcctttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatg |
185 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
54971597 |
tatagccgcgcctcagattttggtctaatgaagattgatgataaaggaaggatcctttcatttagtgaaaagcctaaa-ggagcagagctcaaagcaatg |
54971499 |
T |
|
| Q |
186 |
gtaagtctcatgtttatcatact |
208 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
54971498 |
gtaagtctcatgtttatcatact |
54971476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University