View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5613_low_1 (Length: 792)
Name: NF5613_low_1
Description: NF5613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5613_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 16 - 774
Target Start/End: Complemental strand, 10196577 - 10195826
Alignment:
| Q |
16 |
atccacataacattcttattgtcaaatccctatcatagacagatacaaatcaagatgatattgtgtagaaaagttcaaaggaagttcaatgttcaattat |
115 |
Q |
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| T |
10196577 |
atccacataacattcttattgtcaaatccctatcatagacaggtacagatcaagatgatattgtgtagaaaagttcaaaggaagttcaatgttcaattat |
10196478 |
T |
|
| Q |
116 |
atttgtgaattggggtcaccccgatatttgcgggaagatacatgattagagacaatatgnnnnnnnn-ttgagatgactatgaaatgaaaaataattgtc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| | |
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| T |
10196477 |
atttgtgaattggggtcaccccgatatttgcgggaatatacatgattagagacaatatgaaaaaaaaattgagatgactatgaaa-----aataattatt |
10196383 |
T |
|
| Q |
215 |
taagcattattttatgcattataaattttagcacaagttgcacatatagtaaccgaaatcacatccatagttccataattcctttataaaagtatataat |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196382 |
taagcattattttatgcatta--aattttagcacaagttgcacatatagtaaccgaaatcacatccatagttccataattcctttataaaagtatataat |
10196285 |
T |
|
| Q |
315 |
ttggtaaccataatatagtcatatacatcctcctttttcatcctttttcttttcaagtactaacccaatccatttctttctttacacnnnnnnnngagca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10196284 |
ttggtaaccataatatagtcatatacatcctccttttccatcctttttcttttcaagtactaacccaatccatttctttctttacacaaaaaaa-gagca |
10196186 |
T |
|
| Q |
415 |
agaaataagaaaatgggtgctctagatttcctttcagattacttcactgtcaccccaaaaaagaaacacaaacccatgcaggtttttcactagctcctat |
514 |
Q |
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| T |
10196185 |
agaaataagaaaatgggtgctctagatttcctttcagattacttcactgtcaccccaaaaaagaaacacaaacccatgcaggtttttcactagctcctat |
10196086 |
T |
|
| Q |
515 |
gtatcctatctcattaatagtgagcttattagtcttaagaaaattctgannnnnnnnnnnnnnnnnnnnnnctcttatagacagttgaaataaaggtgaa |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10196085 |
gtatcctatctcattaatagtgagcttattagtcttaagaaaattctgattttattttttgcaacttttttctcttatagacagttgaaataaaggtgaa |
10195986 |
T |
|
| Q |
615 |
aatggactgtgatggctgtgaaagaagagttcggaattctgttaccaacatgtcaggtatataatcatatctctctctcttcttatctcaaatcaaatgg |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195985 |
aatggactgtgatggctgtgaaagaagagttcggaattctgttaccaacatgtcaggtatataatcatatctctctctcttcttatctcaaatcaaatgg |
10195886 |
T |
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| Q |
715 |
cataatttttaggtagtttacataataagaatgttcatattctcgatgaaggtgggttct |
774 |
Q |
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| T |
10195885 |
cataatttttaggtagtttacataataagaatgttcatattctcaatgaaggtgggttct |
10195826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 593 - 657
Target Start/End: Original strand, 10651113 - 10651177
Alignment:
| Q |
593 |
agacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagttcggaattctgtt |
657 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
10651113 |
agacggttgaaatcaaggtgaaaatggactgtgatggatgtgaaagaagagttaggaattctgtt |
10651177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 644
Target Start/End: Original strand, 31886816 - 31886871
Alignment:
| Q |
589 |
ttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
644 |
Q |
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|||||||||||||| || || || |||||||| |||||||| |||||||||||||| |
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| T |
31886816 |
ttatagacagttgagatcaaagtcaaaatggattgtgatgggtgtgaaagaagagt |
31886871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 644
Target Start/End: Original strand, 54277 - 54328
Alignment:
| Q |
593 |
agacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
644 |
Q |
| |
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|||| ||||| ||||| |||| ||||||||||||||| |||||||||||||| |
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| T |
54277 |
agacggttgagataaaagtgagaatggactgtgatggttgtgaaagaagagt |
54328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 644
Target Start/End: Original strand, 2306629 - 2306684
Alignment:
| Q |
589 |
ttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
644 |
Q |
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|||||||||||||| || || || |||||||| |||||||| |||||||||||||| |
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| T |
2306629 |
ttatagacagttgagatcaaagtcaaaatggattgtgatgggtgtgaaagaagagt |
2306684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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