View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5613_low_3 (Length: 482)
Name: NF5613_low_3
Description: NF5613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5613_low_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 132 - 471
Target Start/End: Complemental strand, 22684888 - 22684547
Alignment:
| Q |
132 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttaatttta |
231 |
Q |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttg-tttta |
22684790 |
T |
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| Q |
232 |
tatataggttgtgactcctctggcaaaatatgccttaacattattgcctattgcatcaagcatagaggaacttgtc---ccttctcctaggctaagatgt |
328 |
Q |
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| T |
22684789 |
tttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgt |
22684690 |
T |
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| Q |
329 |
tatcctatgtctattctcatcagaacagctttagtgctttcaagtttacttgtggccctctcttttccatattttggtaagtattgtccatactattatt |
428 |
Q |
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| T |
22684689 |
tatgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatt |
22684590 |
T |
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| Q |
429 |
actacctttgtgcgttgctctattgcacttacacttctgatga |
471 |
Q |
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| T |
22684589 |
actacctttgtgcgttgctctgttgcacttacacttctgatga |
22684547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 169 - 447
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
169 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttaattttatatataggttgtgactcctctggcaaaatatgcctta |
268 |
Q |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgtttta-ttttacatataggttgtgactcctctggcaaaatatgcctta |
22696048 |
T |
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| Q |
269 |
acattattgcctattgcatcaagcatagaggaacttgtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtgcttt |
368 |
Q |
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| T |
22696047 |
acattattgcctattgcatcaagcatagaggaacttgtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggttt |
22695948 |
T |
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| Q |
369 |
caagtttacttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
447 |
Q |
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| T |
22695947 |
caagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 24493308 - 24493177
Alignment:
| Q |
7 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtgactcggtctagacaaatgtaag |
106 |
Q |
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| T |
24493308 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatataag |
24493209 |
T |
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| Q |
107 |
agtgatattgtgtagaataaccaaggaaaaca |
138 |
Q |
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| T |
24493208 |
agtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 92673 - 92542
Alignment:
| Q |
7 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtgactcggtctagacaaatgtaag |
106 |
Q |
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| T |
92673 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaag |
92574 |
T |
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| Q |
107 |
agtgatattgtgtagaataaccaaggaaaaca |
138 |
Q |
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| T |
92573 |
agtgatattgtgtagaataaccaagtaaaaca |
92542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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