View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5613_low_5 (Length: 235)
Name: NF5613_low_5
Description: NF5613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5613_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 54980078 - 54979858
Alignment:
| Q |
5 |
gcctcctcatttggcattcaaaacatgtctaatatttagccttatcaaattggcatcataactaatgttttattcaaccactatagctgcacctcagatt |
104 |
Q |
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| T |
54980078 |
gcctcctcatttggcattcaaaacatgtctaatatttagccttatcaaattgacatcataactaatgttttatgcaaccactatagctgcacctcagatt |
54979979 |
T |
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| Q |
105 |
ttggcctaatgaaggttgacaataaatagaggatcctttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatggtaagtctcatgtttatca |
204 |
Q |
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| T |
54979978 |
ttggcctaatgaagattgacaataaatagaggatcctttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatggtaagtctcatgtttatca |
54979879 |
T |
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| Q |
205 |
tactacaagtttcaagaatta |
225 |
Q |
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||||||||||||||||||||| |
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| T |
54979878 |
tactacaagtttcaagaatta |
54979858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 54971597 - 54971476
Alignment:
| Q |
86 |
tatagctgcacctcagattttggcctaatgaaggttgacaataaatagaggatcctttcatttagtgaaaagcctaaagggcgcagagctcaaagcaatg |
185 |
Q |
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|||||| || ||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
54971597 |
tatagccgcgcctcagattttggtctaatgaagattgatgataaaggaaggatcctttcatttagtgaaaagcctaaa-ggagcagagctcaaagcaatg |
54971499 |
T |
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| Q |
186 |
gtaagtctcatgtttatcatact |
208 |
Q |
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| T |
54971498 |
gtaagtctcatgtttatcatact |
54971476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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