View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614-Insertion-1 (Length: 623)
Name: NF5614-Insertion-1
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 623
Target Start/End: Original strand, 49807877 - 49808492
Alignment:
| Q |
8 |
gttttgaaattgaattaggcatttgagaggcacaacgtagagaaagatgttgcagagactataaagaaggagtttgacaagaggcatggtcctacctggc |
107 |
Q |
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| T |
49807877 |
gttttgaaattgaattaggcatttgagaggcacaacgtagagaaagatgttgcagagactataaagaaggagtttgacaagaggcatggtcctacctggc |
49807976 |
T |
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| Q |
108 |
attgtattgttggccgcaatttcggtatttcttattacccttaattagatctataatctatttctctatgcttaacttactcattttttacttcaattta |
207 |
Q |
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| T |
49807977 |
attgtattgttggccgcaatttcggtatttcttattccccttaattagatctataatctatttctctatgcttaacttactcattttttacttcaattta |
49808076 |
T |
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| Q |
208 |
ttgttttcgtgctgcgaatgctgttgannnnnnnaccaatttttaagtcataagttatgactttgaaaacctagattttttctatttactactgttttct |
307 |
Q |
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| T |
49808077 |
ttgttttcgtgctgggaatgctgttgatttttttaccaattttt-agtcataagttatgactttgaaaacctagattttttctatttactactgttttct |
49808175 |
T |
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| Q |
308 |
tattgtcgtgtgtagttaacaaaatggaaggtctaagtgatctcattttttaatg-nnnnnnnttaaattctaaggcgtgtctggtgtctgacttttcaa |
406 |
Q |
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| T |
49808176 |
tattgtcgtgtgtagttaacaaaatggaaggtctaagtgatctcattttttaatgaaaaaaaattaaattctaaggcttgtctggtgtctgacttttcaa |
49808275 |
T |
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| Q |
407 |
attatatgtactccattttttaaaattgttattagtgtatgtgttagtgtcgtgcatgtgtatcagtgtatgtgttttatagattgaattttggagttgt |
506 |
Q |
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| T |
49808276 |
attatatgtactccattttttaaaattgttattagtgtatgtgttagtgtcgtgcatgtgtatcagtgtatgtgttttatagattgaattttggagttgt |
49808375 |
T |
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| Q |
507 |
aaacttttcaagttatttctacctggagatgagtaattcttgagtggggtacttagggatgacaattgaacacaaaccaactgagtttgatcgtagtggt |
606 |
Q |
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| T |
49808376 |
aaacttttcaagttatttctacctggagatgagtaattcttgagtggggtacttagggatgacaattgaacacaaaccaactgagtttgatcgtagtagt |
49808475 |
T |
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| Q |
607 |
ataggaccactttgtat |
623 |
Q |
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| T |
49808476 |
ataggaccactttgtat |
49808492 |
T |
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