View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614-Insertion-2 (Length: 1088)
Name: NF5614-Insertion-2
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614-Insertion-2 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 499 - 914
Target Start/End: Original strand, 39509853 - 39510269
Alignment:
| Q |
499 |
ctttgaaatttgaaggtgaatttggattggaaaccgttttacttacaatacaagatctctctttcggacatctaggcgattttgtagggaaataacggag |
598 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39509853 |
ctttgaactttgaaggtgaatttggattggaaaccgttttacttacaatacaagatctctctttcggacatctaggcgattttgtagggaaataacggag |
39509952 |
T |
|
| Q |
599 |
attccgcaatcacttataaatacgcgtacgtgtgggtaacattttctctcttttcgaaacgccgtaaacctctcaattttctgcattttacgcgcattct |
698 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39509953 |
attccgcaatcacttataaatacgcgtacgtgtgggtaacattttctctcttttcgaaacgccgtaagcctctcaattttctgcattttacgcgcattct |
39510052 |
T |
|
| Q |
699 |
atttctcctacaacgaaacccttgttttctctctttctgcaataaatcaaccgaataatggacagcgattccattcactgagttgaaccggagaaagatc |
798 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39510053 |
atttctcctacaacgaaacccttgttttctctctttctgcaatatatcaaccgaataatggactgcgattccattcactgagttgaaccggagaaagatc |
39510152 |
T |
|
| Q |
799 |
taagtttttgtgatcaattcaacgcgcttatgggtggttctggttctaaactcgagaaggctctcggcgataatttccctgaaggagaacattactttgg |
898 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39510153 |
taagtttttgtgatcaattcaacgcgcttatgggtggttctggttctaaactcgagaaggctctcggtgataatttccctgaaggagaacattactttgg |
39510252 |
T |
|
| Q |
899 |
ccttgag-atttcggca |
914 |
Q |
| |
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| T |
39510253 |
ccttgagaatttcggca |
39510269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Original strand, 39509354 - 39509776
Alignment:
| Q |
8 |
cattcaatctatccatgctcaccgttagctaataacttgaagttccaattgaagatacaacaattaacaaaagacacccaatgagattcgcttgaatcac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39509354 |
cattcaatctatccatgctcaccgttagctaataacttgaagtttcaattgaagatacaacaattaacaaaagacacccaatgagattcgcttgattcac |
39509453 |
T |
|
| Q |
108 |
atgtttgaattgacatatgaggaagaaattgataataaagattcaaactttgaaattattgatgaacaatctacccaggaaattgataagtgaacgaaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39509454 |
atgtttgaattgacatatgaggaagaaattgataataaagattcaaactttgaaattattgatgaacaatctacccaggaatttgataagtgaacgaaag |
39509553 |
T |
|
| Q |
208 |
aaaacataatttaatattctacaattgcaatttgcaaacgctggaagagaattcaagatcactttggagagagaccatggttgtaggaagatgaatgaaa |
307 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
39509554 |
aaaacagaatttaatattctacaattgcaatttgcaaacgctagaagagaattaatgatcatcttggagagagaccatggttgtaggaatataaatgaaa |
39509653 |
T |
|
| Q |
308 |
gtggaatgtgtttactaacatacatttaacggggttaattgtaagggagacatttattacttttaatacaatttaagagaggtttatgtttagttgaaaa |
407 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
39509654 |
gtgaaatgtgtttactaacatacatttaacggggttaattgtaagggagacatttattacttttaatacaatttaagagaggttgatgtttagtttaaaa |
39509753 |
T |
|
| Q |
408 |
ttagagggggtgttagtattgttt |
431 |
Q |
| |
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|||| ||| |||||||||||||| |
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| T |
39509754 |
ttag-tgggatgttagtattgttt |
39509776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 77 - 416
Target Start/End: Original strand, 149285 - 149618
Alignment:
| Q |
77 |
aaagacacccaatgagattcgcttgaatcacatgtttgaattgacatatgaggaagaaattgataataaagattcaaactttgaaattattgatgaacaa |
176 |
Q |
| |
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|||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
149285 |
aaagacacacaatgagattcaattgattcagatgtttgaattgacatatgaggaagaaattgataataaagattcaatctttgaaattattgatgaacaa |
149384 |
T |
|
| Q |
177 |
tctacccaggaaattgataagtgaacgaaagaaaacataatttaatattctacaattgcaatttgcaaacgctggaagagaattcaagatcactttggag |
276 |
Q |
| |
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|||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||| || ||||||||| |||| ||| |||||| |
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| T |
149385 |
tctacccaagaatttgataagtgaacaaaagaaaacataattaaatattcta------caatttgcaaattgtgaaagagaattaaagagcaccttggag |
149478 |
T |
|
| Q |
277 |
agagaccatggttgtaggaagatgaatgaaagtggaatgtgtttactaacatacatttaacggggttaattgtaagggagacatttattacttttaatac |
376 |
Q |
| |
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||||||||||||||| ||| ||| ||| |||||||||||||| | ||||||||| |||| | ||||||||| |||| | |||| |||||||||||| |
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| T |
149479 |
agagaccatggttgtttgaatatggatggaagtggaatgtgttaattaacatacaactaacagtgttaattgtcagggtggtatttgttacttttaataa |
149578 |
T |
|
| Q |
377 |
aatttaagagaggtttatgtttagttgaaaattagagggg |
416 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||| |||||||| |
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| T |
149579 |
aattcaagggaggtttgtgtttagttgaaaactagagggg |
149618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 80; Significance: 6e-37; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 2989 - 2812
Alignment:
| Q |
8 |
cattcaatctatccatgctcaccgttagctaataacttgaagttccaattgaagatacaacaattaacaaaagacacccaatgagattcgcttgaatcac |
107 |
Q |
| |
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||||||||||||||||| ||| |||||| ||||||| |||||| |||| || |||||||||||||||||||| ||| ||||||||||| || |
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| T |
2989 |
cattcaatctatccatgttcattgttagccaataactcgaagtttcaatggatgatacaacaattaacaaaaggcacacaatgagattc---------ac |
2899 |
T |
|
| Q |
108 |
atgtttgaattgacatatgaggaagaaattgataataaagattcaaactttgaaattattgatgaacaatctacccaggaaattgata |
195 |
Q |
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||||| || |||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
2898 |
atgttggatttgacatatgaggatgaa-ttgataataaaggttcaaactttgaaattgttgatgaacaatctacccaagaatttgata |
2812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 29258659 - 29258482
Alignment:
| Q |
8 |
cattcaatctatccatgctcaccgttagctaataacttgaagttccaattgaagatacaacaattaacaaaagacacccaatgagattcgcttgaatcac |
107 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||| |||||| |||| || |||||||||||||||||||| ||| ||||||||||| || |
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|
| T |
29258659 |
cattcaatctatccatgttcattgttagccaataactcgaagtttcaatggatgatacaacaattaacaaaaggcacacaatgagattc---------ac |
29258569 |
T |
|
| Q |
108 |
atgtttgaattgacatatgaggaagaaattgataataaagattcaaactttgaaattattgatgaacaatctacccaggaaattgata |
195 |
Q |
| |
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||||| || |||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||| |
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|
| T |
29258568 |
atgttggatttgacatatgaggatgaa-ttgataataaaggttcaaactttgaaattgttgatgaacaatctacccaagaatttgata |
29258482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 29259097 - 29259143
Alignment:
| Q |
366 |
acttttaatacaatttaagagaggtttatgtttagttgaaaattaga |
412 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
29259097 |
acttttaataaaatttaatggaggtttatgtttagttgaaaactaga |
29259143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 25989821 - 25989900
Alignment:
| Q |
345 |
attgtaagggagacatttattacttttaatacaatttaagagaggtttatgtttagttgaaaattagagggggtgttagt |
424 |
Q |
| |
|
||||||||||||| || | | |||||||||| |||||||| ||||||| |||||||||||||| || ||||||||||||| |
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| T |
25989821 |
attgtaagggagatatatgtcacttttaataaaatttaagggaggtttgtgtttagttgaaaactaaagggggtgttagt |
25989900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 25989380 - 25989273
Alignment:
| Q |
21 |
catgctcaccgttagctaataacttgaagttccaattgaagatacaacaattaacaaaagacacccaatgagattcgcttgaatcacatgtttgaattga |
120 |
Q |
| |
|
||||||| | |||||| || ||| ||||| |||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||| || || |||| |
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| T |
25989380 |
catgctccctgttagccaacaacctgaagctccaattgaagatacaacaattaagaaaagaca--caatgagactcacttgattcacatattggatttga |
25989283 |
T |
|
| Q |
121 |
catatgagga |
130 |
Q |
| |
|
|||| ||||| |
|
|
| T |
25989282 |
catacgagga |
25989273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 423
Target Start/End: Complemental strand, 25989156 - 25988993
Alignment:
| Q |
271 |
ttggagagagaccatggttgtaggaagatgaatgaaagtggaatgtgtttactaacatacatttaacggggtt-----------aattgtaagggagaca |
359 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | ||||| ||| ||| ||||||||| | |
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| T |
25989156 |
ttggagagagacaatggttgtgtgaagatgaaagaaagtggaaggtgtttagtaacatataattaactatgttctaacagtgtcaatagtaagggaggta |
25989057 |
T |
|
| Q |
360 |
tttattacttttaatacaatttaagagaggtttatgtttagttgaaaattagagggggtgttag |
423 |
Q |
| |
|
||| | |||||||||| |||||||| ||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
25989056 |
tttgtcacttttaataaaatttaagggaggtttgtgtttagtagaaaactagagggggtgttag |
25988993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 828 - 914
Target Start/End: Original strand, 37822251 - 37822338
Alignment:
| Q |
828 |
atgggtggttctggttctaaactcgagaaggctctcggcgataatttccctgaaggagaacattactttggccttgag-atttcggca |
914 |
Q |
| |
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||||||| | ||||||| || || |||||||| ||||| || | |||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
37822251 |
atgggtgctgctggttccaagcttgagaaggcactcggtgaccaattccctgaaggagaacgttactttggtcttgagaatttcggca |
37822338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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