View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614-Insertion-3 (Length: 1025)
Name: NF5614-Insertion-3
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 432 - 761
Target Start/End: Original strand, 7835207 - 7835537
Alignment:
| Q |
432 |
cattactcaaataatttttaaatctatgagnnnnnnncaatttctaaatgtccttttcgtaagaaaaaa-gtctgatctaggacaaacattcaatcaagg |
530 |
Q |
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| T |
7835207 |
cattactcaaataatttttaaatctacgagaaaaaaacaatttctaaatgtccatttcgtaagaaaaaaagtctgatctaggacaaacattcaatcaagg |
7835306 |
T |
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| Q |
531 |
gtaatatttgagtagagttgaattatcgctatttgagtgggg-ttgagttattgcaatttggcaccacggtgaattcgatataattaaagattattcatt |
629 |
Q |
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| T |
7835307 |
gtaatatttgagtagagttgaattatcgctatttgagtgggggttgagttattgcaatttggcaccacggtgaattcgacataattaa-gatcattcatt |
7835405 |
T |
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| Q |
630 |
ctaatttttcaaaagctatattttttaacctttgcataatcacgataaagatgcatgtgtttttccggataaacaacttacttgcgctttataacacaag |
729 |
Q |
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| T |
7835406 |
ctaatttttcaaaagctatattttttaacctttgcataatcacggtaaagatgcatgtgtttttccggataaacaacttacttgcgctttataacacaaa |
7835505 |
T |
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| Q |
730 |
cacttaccataataactgcacaaacacttatc |
761 |
Q |
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| T |
7835506 |
cacttaccataataactgcacaaacacttatc |
7835537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 7834763 - 7834921
Alignment:
| Q |
8 |
tcctttccgtcaagtgtgatgaacttaaa-----ctatgcaatgctaaaaggttgagaatacacgtaaccaacatgggaattgccctccaataatgcaat |
102 |
Q |
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| T |
7834763 |
tcctttccgtcaagtgtgatgaacttaaacaatccaatgcaatgctaaaaggttgagaatacacgtaaccaacatgggaattgccctccaataatgcaat |
7834862 |
T |
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| Q |
103 |
tttccatgatcatgtcaatcaagagttttgagtcaaaaaataattttataatatgatag |
161 |
Q |
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| T |
7834863 |
tttccataatcatgtcaatcaagagttttgagtcaaaaaataattttataatatgatag |
7834921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 176 - 348
Target Start/End: Original strand, 7834951 - 7835123
Alignment:
| Q |
176 |
ataatatgatagttattcatctaacctttagttatatatnnnnnnnnnntaactattattgtatcaagtgtgtatcaagtgagaagtcatttatatacct |
275 |
Q |
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| T |
7834951 |
ataatatgatagttattcatctaatctttagttatatatatataaaaaataattgttattgtatcaagtgtgtatcaagtgagaagtcatttatatacct |
7835050 |
T |
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| Q |
276 |
aaggtcctaaagtattgagttacgatatgatgtcttatttcatttatgtggtaactcaaaactaaatgtgatg |
348 |
Q |
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| T |
7835051 |
aaggtcctaaagtattgagttatgatatgatgtcttatttcatttatgtggtaactcaaaactaaatgtgatg |
7835123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 847 - 926
Target Start/End: Original strand, 7835625 - 7835707
Alignment:
| Q |
847 |
aaaaagtttgtgaaaatttttataagctaattttataaattcttat-aattctcccaaccaatcacacaaa--ttatgacagt |
926 |
Q |
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| T |
7835625 |
aaaaagtttgtgaaaatttttataagctaattttataaattcttataaattctcccaaccaatcacacaaaatttatgacagt |
7835707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 43305252 - 43305166
Alignment:
| Q |
49 |
aaaaggttgagaatacacgtaaccaacatgggaattgc-cctccaa-taatgcaattttccatgatcatgtcaatcaagagttttga |
133 |
Q |
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| T |
43305252 |
aaaaggttgtgaatacacttaaccaaaatgggaattactcctccaaataatgcaatttttcttaatcatgtcaatcaaaagttttga |
43305166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 43279957 - 43279871
Alignment:
| Q |
49 |
aaaaggttgagaatacacgtaaccaacatgggaattgc-cctccaa-taatgcaattttccatgatcatgtcaatcaagagttttga |
133 |
Q |
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| T |
43279957 |
aaaaggttgcgaatacacttaaccaaaatgggaattattcctccaaatagtgcaatttttcttaatcatgtcaatcaaaagttttga |
43279871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 739
Target Start/End: Complemental strand, 26143824 - 26143781
Alignment:
| Q |
696 |
ggataaacaacttacttgcgctttataacacaagcacttaccat |
739 |
Q |
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| T |
26143824 |
ggataaacaacttatttgcagtttataacacaagcacttaccat |
26143781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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