View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614-Insertion-4 (Length: 950)
Name: NF5614-Insertion-4
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 25260408 - 25260938
Alignment:
| Q |
8 |
atatggagacgcacaatttcaaggttaatggagcatttactcaaatgactcactacatacaatgtgatgttattttcacttttattgattataggtacgt |
107 |
Q |
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| T |
25260408 |
atatggagacgcacaatttcaaggttaatggagcatttactcaaatgactcactacacacaatgtgatgttattttcacttttattgattataggtacgt |
25260507 |
T |
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| Q |
108 |
gcaagaaagaaaatgaaagaatttactatgtgttgtgtgtgtatatgaagggttgctatgtatatgactactcttctatactttaaatatgtatatccat |
207 |
Q |
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| T |
25260508 |
gcaagaaagaaaatgaaagaatttact--gtgttgtgtgtgtatatgaagggtttctattta--------ctcctctatactttaaatatgtatatccat |
25260597 |
T |
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| Q |
208 |
atttaggatttttctatttagttatgaattgataggtaaggttatagattgagctttacattgaagagagataatgatttgtgtgcagtatgtgcaattt |
307 |
Q |
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| T |
25260598 |
atgtaggatttttctatttagttatgaattgataggtaaggttatagattgagctctacattgaagagagataatgatttgtgtgcagtatgtgcaattt |
25260697 |
T |
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| Q |
308 |
tgattatatgacatattgaattaactaaaaatattagatgacaaaatagtttatttcaatatatataattaaaatgatgtgtgtatttgnnnnnnnnnnn |
407 |
Q |
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| T |
25260698 |
tgattatatgacatattcaattaactaaaaatattagatgacaaaatagtttatttcaatatatataattaaaatgatgtgggtatttg--tatatatat |
25260795 |
T |
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| Q |
408 |
nattagttttcattttagtgaaccgtatgaagcttttgatgatagcttgctgatttagttttttcatggaaaagttcatattcgaaatgattattggaca |
507 |
Q |
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| T |
25260796 |
aattagttttcattttagtgaaccgtatgaagcttttgatgatagcttgctgatttagttttttcatggaaaagttcatattcgaaatgattattggaca |
25260895 |
T |
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| Q |
508 |
ttgatacgtgcacgtgagagagctcatcatgttagggacctta |
550 |
Q |
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| T |
25260896 |
ttgatacgtgcacgtgagagagctcatcatgttagggacctta |
25260938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 649 - 889
Target Start/End: Original strand, 25261034 - 25261277
Alignment:
| Q |
649 |
aattaataaaataatgtaacaacaacaaaaatgaagatatatgttgagctcaagttaatgtaaatggttactctcacaattatgaatgaaccaaaagttc |
748 |
Q |
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| T |
25261034 |
aattaataaaataatgtaacaacaacaaaaatgatgatatatgttgagctcaagttaatgtaaatggttactctcacaattatgaatgaaccaaaagttt |
25261133 |
T |
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| Q |
749 |
aataatagttaatattttggatcgagatttggtgttcaagtctttcggtgaccttgcatcgtttagtttcatgttgttattgattgatgcttccc-aata |
847 |
Q |
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| T |
25261134 |
aataatagttaatattttggatcgagatttggtgttcaagtctttcagtgaccttggatcgtttagtctgatgttgttattgattgatgcttcccaaata |
25261233 |
T |
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| Q |
848 |
atttgtctttaatttttt--gtaggcctctggtctagctctagg |
889 |
Q |
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| T |
25261234 |
atttggctttaatttttttgttaggcctctggtctggctctagg |
25261277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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