View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614_high_10 (Length: 237)
Name: NF5614_high_10
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48065857 - 48065639
Alignment:
| Q |
1 |
acatgtaatttctagccgccaatgtagccagagtttaaaatgagtctcagtcagatttattcttcatcataatcacatacaattacaaacatggacaaat |
100 |
Q |
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| T |
48065857 |
acatgtaatttctagccgccaatgtagccagagtttaaaatgactctcagtcagatttattcttcatcataatcacatacaattacaaacatggacaaat |
48065758 |
T |
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| Q |
101 |
atttttacttcttgccagtattgcttaactggtagtagtggtatacacctgtaagtgtaacttagtcgacaaattaaattagcaccttgccgaaacaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48065757 |
atttttacttcttgccagtattgcttaactgg---tagtggtatacacctgtaagtgtaacttagtcgacaaattaaattagcaccttgccgaaacaagt |
48065661 |
T |
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| Q |
201 |
acaattaggtaggtgttggaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48065660 |
acaattaggtaggtgttggaac |
48065639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48083263 - 48083192
Alignment:
| Q |
1 |
acatgtaatttctagccgccaatgtagccagagtttaaaatgagtctcagtcagatttattcttcatcataa |
72 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
48083263 |
acatgtaatttctagccgccaatgtagccagagtttaaaatgactctcaatcagatttattcttcatcataa |
48083192 |
T |
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