View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614_high_2 (Length: 369)
Name: NF5614_high_2
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 133 - 352
Target Start/End: Complemental strand, 33761897 - 33761683
Alignment:
| Q |
133 |
tgagttacgtggtaatgtccgtgaggtcactcccaacccaaccaatagacattgactatagcgtacgtagccaatgcatgtgtttctttacaaatcacaa |
232 |
Q |
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| T |
33761897 |
tgagttacgtggtaatgtccgtgaggtcactcccaacc-----aatagacattgactatagtgtacgtagccaatgcatgtgtttctttacaaatcacaa |
33761803 |
T |
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| Q |
233 |
ccacaatacgacactaacattaaggttcaaaacctatgtcactttttcttccttttcttatttctcaattggaaagggaaatagaacaaggttttgttta |
332 |
Q |
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| T |
33761802 |
ccacaatacgacactaacattaaggttcaaaacctatgtcactttttcttccttttcttatttctcaattggaaagggaaatagaacaaggttttgttta |
33761703 |
T |
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| Q |
333 |
gcctattaaaatggcaaagt |
352 |
Q |
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| T |
33761702 |
gcctattaaaatggcaaagt |
33761683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 33762797 - 33762761
Alignment:
| Q |
6 |
aattgctgagtgcatcatgtggcatttgttctttctg |
42 |
Q |
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| T |
33762797 |
aattgttgagtgcatcatgtggcatttgttctttctg |
33762761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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