View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614_high_3 (Length: 349)
Name: NF5614_high_3
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 8249451 - 8249129
Alignment:
| Q |
20 |
ataaggaggggtccagaatttggaggatgccatcgatattatcttattttctgactcatttcttggaccaaactgtgatatcaatactac-tatagaaaa |
118 |
Q |
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| T |
8249451 |
ataaggaggggtccagaatttggaggatgccatcgatattatcttattttctgactcatttcttggaccaaactgtgatatcaatactacctatagaaaa |
8249352 |
T |
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| Q |
119 |
aacctgtgacagtgata-caatacactggtccaatattttcttccgatggttgctttatattttatttcaaactaatctttctataagagtagcaatatt |
217 |
Q |
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| T |
8249351 |
aacctgtgacagtgatatcaatacactggtccaatattttcttccgatggttgctttatattttatttcaaactactctttctataagagtagcaatatt |
8249252 |
T |
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| Q |
218 |
gatcaaagagtagcgatttgttaacttcaaagaagaagnnnnnnngagtggatacgaaaagactaattttagacacaaaattgatttttacatgcatgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8249251 |
gatcaaagagtagcgatttgttaacttcaaagaagaagaaaaaaagagtggatacgaaaagactaattttagacacaaaattgatttttacatgcatgtt |
8249152 |
T |
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| Q |
318 |
tgagggatgtcgattagaataat |
340 |
Q |
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| T |
8249151 |
tgagggatgtcgattagaataat |
8249129 |
T |
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