View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614_high_6 (Length: 258)
Name: NF5614_high_6
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52429093 - 52428857
Alignment:
| Q |
1 |
gtaatactgagttagcagagaagttgattccggaacatgagttgcggagactaagaaatatggcgttgaggatggtggagaggttcagtgttggagttgc |
100 |
Q |
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| T |
52429093 |
gtaatactgagttagcagagaagttcattccggaacatgagttgcggagactaagaaatatggcgttgaggatggtggagaggttcagtgttggagttgc |
52428994 |
T |
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| Q |
101 |
cggtattactcaggaattggtggatgctattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctctctctgctaatatgaaa |
200 |
Q |
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| T |
52428993 |
cggtattactcaggaattggtggatgctattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctctctctgctaatatgaaa |
52428894 |
T |
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| Q |
201 |
agagctcatcaaattctcgaggtttaatgctcattcc |
237 |
Q |
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| T |
52428893 |
agagctcatcaaattctcgaggtttaatgctcattcc |
52428857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 27412569 - 27412778
Alignment:
| Q |
28 |
ttccggaacatgagttgcggagactaagaaatatggcgttgaggatggtggagaggttcagtgttggagttgccggtattactcaggaattggtggatgc |
127 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
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| T |
27412569 |
ttccagaacatgagttgcggagactaagaaatatggcgttgatgatggtggagaggttcggtgttggagttgctggtattactcacgaattggtggatgc |
27412668 |
T |
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| Q |
128 |
tattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctctctctgctaatatgaaaagagctcatcaaattctcgaggtttaa |
227 |
Q |
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| T |
27412669 |
tattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctctttctgctaatatgaaaagagctaatcaaattcttgaggttcaa |
27412768 |
T |
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| Q |
228 |
tgctcattcc |
237 |
Q |
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| T |
27412769 |
tgctccttcc |
27412778 |
T |
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