View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5614_high_8 (Length: 254)
Name: NF5614_high_8
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33762788 - 33763009
Alignment:
| Q |
1 |
ctcagcaattaataatgtccactcagcacccttgtacaacaaataatatactttgtcaatatagtcaacaatcaatacacaatctcaacctctccacttt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33762788 |
ctcaacaattaataatgtccactcagcacccttgtacaacaaataatatactttgtcaatatagtcaacaatcaatacacaatctcaacctctccacttt |
33762887 |
T |
|
| Q |
101 |
cacttgtttgatttcaagtaccacagacacacaacgaattttgttcttctgagaaatacatcagataaatctggtctcaactagtttgacaatctgacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33762888 |
cacttgtttgatttcaagtaccacagacacacaacgaattttgttcttctgagaaatacatcagataaatctggtctcaactagtttgacaatctggcca |
33762987 |
T |
|
| Q |
201 |
aactccatttcaaaaggttcgg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33762988 |
aactccatttcaaaaggttcgg |
33763009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University