View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614_low_1 (Length: 631)
Name: NF5614_low_1
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Original strand, 30877236 - 30877849
Alignment:
| Q |
18 |
aatagttatacataagcatttatatgatatctgactcggatcctttaagcaaagtttcgggctcgatccttgtgtaaaggaaaaacttgggttaggaggg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30877236 |
aatagttatacataagcatttatatgatatctgactcggatcctttaagcaaagtttcgggctcgatccatgtgtaaaggaaaaacttgggttaggaggg |
30877335 |
T |
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| Q |
118 |
gagagcccactaaacatcactagttagatttcattgtggatattggttggtggatacttcacaccaatataattggttattaaaaaataattaagcatta |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877336 |
gagagcccactaaacatcactagttagctttcattgtggatattggttggtggatacttcacaccaatataattggttattaaaaaataattaagcatta |
30877435 |
T |
|
| Q |
218 |
atgtgataagtacttaccttataagtgcttaatttaggttttatccaaacatggagttaaatcacttttctcaatgattaaagaaaggaagatgtaaaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
30877436 |
atgtgataagtacttaccttataagtgcttaatttaggttttatccaaacatggagttaaattacttttctgaatgattaaagaaaggatgatgtaaaag |
30877535 |
T |
|
| Q |
318 |
cgttatgttgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactat |
417 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30877536 |
cattatgttgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttctgcctcactat |
30877635 |
T |
|
| Q |
418 |
gattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaac |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30877636 |
gattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctctctccctatccaaaac |
30877735 |
T |
|
| Q |
518 |
cagagagaaacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttactaattctctcagtagcatctccaaatatatcataa |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30877736 |
cagagagaaacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttaccaattctctcagtagcatctccaaatatatcataa |
30877835 |
T |
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| Q |
618 |
ccttccatttccat |
631 |
Q |
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|||||||||||||| |
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| T |
30877836 |
ccttccatttccat |
30877849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 553
Target Start/End: Original strand, 39332708 - 39332933
Alignment:
| Q |
325 |
ttgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattctt |
424 |
Q |
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||||||||||||| ||| |||||||| |||| |||||| ||||||||||||| |||||| || ||||||||||| ||||| || |||||||||||||| |
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| T |
39332708 |
ttgaactaaccttattagcccctggaataacactacgaagtgtatcaagatgtgaattaattcttgctcttctccttctttctgcttcactatgattctt |
39332807 |
T |
|
| Q |
425 |
caaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagag |
524 |
Q |
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||||||||||| ||||||||| || || |||||||||| ||||| ||| |||| |||||| |||||||| ||| | || ||||| |||||||| || |
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| T |
39332808 |
caaagcttcaatacttctctc---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctttttctctatctaaaaccagtgaa |
39332904 |
T |
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| Q |
525 |
aaacttgaaccatacccacttccaattac |
553 |
Q |
| |
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|| ||||||||| ||| ||||| |||| |
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| T |
39332905 |
gaagatgaaccatatccatttccatttac |
39332933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 416 - 553
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
416 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
515 |
Q |
| |
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|||||||||||||||||||| ||||||||| || ||||||||||||| ||| | ||| |||| |||||| |||| ||| ||| | || ||||||||| |
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| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
|
| Q |
516 |
accagagagaaacttgaaccatacccacttccaattac |
553 |
Q |
| |
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||||| || || ||||||||| ||| ||||| |||| |
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| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 353 - 553
Target Start/End: Original strand, 12102483 - 12102677
Alignment:
| Q |
353 |
gacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtg |
452 |
Q |
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||||| |||||| |||||||||||| |||||| || |||||||||||| || || ||||||||||||||||||||||| | ||||||| | || |
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| T |
12102483 |
gacactacgaagtgtatcaagatgtaaattaattcttgctcttctcctc---tctgcttcactatgattcttcaaagcttcgatacttctccc---aggt |
12102576 |
T |
|
| Q |
453 |
gacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccacttccaatta |
552 |
Q |
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||||||||||||| ||| | ||| |||| |||||| |||||||| ||| | || |||||||||||||| || || ||||||||| ||||||||| ||| |
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| T |
12102577 |
gacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctatccaaaaccagtgaagaagatgaaccatatccacttccattta |
12102676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 545
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
411 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
510 |
Q |
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||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||| |||| |||||| ||||||| ||| | || |||| |
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| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
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| Q |
511 |
ccaaaaccagagagaaacttgaaccatacccactt |
545 |
Q |
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|||||||||| || || ||||||||| |||||| |
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| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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