View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5614_low_6 (Length: 262)
Name: NF5614_low_6
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_low_6 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 23348313 - 23348553
Alignment:
| Q |
13 |
agaaactatatatctacaataaaagtctagtttctcttacatttttacaacatcattcacgaaggacatgctacttgccaacttttacgacatcaagaat |
112 |
Q |
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| T |
23348313 |
agaaactatatatctacaataaaagtctagtttctcctacatttttacaacatcattcacgaaggacatgctacttgccaacttttacgacatcaagaat |
23348412 |
T |
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| Q |
113 |
cgaattaagcacatgaaacatgcattttcaaccttcttttaaacgtattatacagnnnnnnnttagaaggaaaacagaatcaagataaatatgtacctca |
212 |
Q |
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| T |
23348413 |
cgaattaagcacatgaaacatgtattttcaaccttcttttcaacgtattatacagaaaaaaattagaaggaaaacagaatcaagataaatatgtacctca |
23348512 |
T |
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| Q |
213 |
atcccatacatgataggcatttccttatccacgagaataat |
253 |
Q |
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| T |
23348513 |
atcccatacatgataggcatttccttatccacgagaataat |
23348553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 253
Target Start/End: Complemental strand, 160429 - 160298
Alignment:
| Q |
122 |
cacatgaaacatgcattttcaaccttcttttaaacgtattatacagnnnnnnnttagaaggaaaacagaatcaagataaatatgtacctcaatcccatac |
221 |
Q |
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| T |
160429 |
cacatgaaacatgcattttcatccttcttttcaacgtattatacataacaaaattagaaggaaaacataatcaagataaatatgtacctcaatcctattc |
160330 |
T |
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| Q |
222 |
atgataggcatttccttatccacgagaataat |
253 |
Q |
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| T |
160329 |
atgataggaatttccttatccacgagagtaat |
160298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 160713 - 160615
Alignment:
| Q |
23 |
tatctacaataaaagtctagtttctcttacatttttacaacatcattcacgaaggacatgctacttgccaacttttacgacatcaagaatcgaattaag |
121 |
Q |
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| T |
160713 |
tatctacaataaatgtctagtttctcttacatttttacaacatcattcacaaaggacatactatttgccagcttttacgacatcaagaatcgaattaag |
160615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 39635897 - 39635953
Alignment:
| Q |
197 |
ataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaataat |
253 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
39635897 |
ataactatgtacctcaatcccattcatgataggcatttccttatccatgagaataat |
39635953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 39635496 - 39635597
Alignment:
| Q |
23 |
tatctacaataaaagtctagtttctcttacatttttacaacatcattcacgaaggacatgctacttgccaacttttacgacatcaagaatcgaattaagc |
122 |
Q |
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|||||||| |||||| | |||||||| || | |||||| |||||| ||| ||| |||||||||||| | ||||||| |||||||||| ||||||||| |
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| T |
39635496 |
tatctacagtaaaagcccagtttctcctaattctttacagcatcatccacaaagc-catgctacttgctagcttttacagcatcaagaatggaattaagc |
39635594 |
T |
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| Q |
123 |
aca |
125 |
Q |
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||| |
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| T |
39635595 |
aca |
39635597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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