View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5614_low_7 (Length: 261)
Name: NF5614_low_7
Description: NF5614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5614_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 46002216 - 46002345
Alignment:
| Q |
1 |
catatgttccgtagctgnnnnnnnttcaggtaaatacattgaaggaatatttcaaaaaccataatatcgaatcggtgagatctctagtcatgattcaatc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46002216 |
catatgttccgtagctgaaaaaaattcaggtaaatacattgaaggaatatttcaaaaaccataatatcaaatcggtgagatctctagtcatgattcaatc |
46002315 |
T |
|
| Q |
101 |
gattcaactagagtcgagttaaattagatg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46002316 |
gattcaactagagtcgagttaaattagatg |
46002345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 46002427 - 46002464
Alignment:
| Q |
216 |
aattagttgaaccggtgcaaccatccgacagtataatc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46002427 |
aattagttgaaccggtgcaaccatccgacagtataatc |
46002464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University