View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5615-Insertion-2 (Length: 1096)

Name: NF5615-Insertion-2
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5615-Insertion-2
NF5615-Insertion-2
[»] chr1 (11 HSPs)
chr1 (8-969)||(9803077-9804040)
chr1 (69-394)||(9828499-9828821)
chr1 (69-218)||(9755197-9755346)
chr1 (815-908)||(37738142-37738235)
chr1 (523-624)||(37738420-37738521)
chr1 (816-949)||(25126184-25126317)
chr1 (314-394)||(9813710-9813790)
chr1 (895-963)||(26214495-26214565)
chr1 (8-44)||(9755356-9755392)
chr1 (8-44)||(9828831-9828867)
chr1 (342-427)||(9824163-9824248)
[»] chr7 (4 HSPs)
chr7 (523-969)||(18476614-18477059)
chr7 (532-969)||(19813970-19814388)
chr7 (815-961)||(3004209-3004357)
chr7 (523-624)||(3003923-3004024)
[»] scaffold0432 (1 HSPs)
scaffold0432 (10-346)||(7033-7368)
[»] chr2 (2 HSPs)
chr2 (817-961)||(23681512-23681658)
chr2 (523-624)||(23681221-23681322)
[»] chr5 (4 HSPs)
chr5 (815-923)||(36731986-36732094)
chr5 (815-963)||(23884756-23884906)
chr5 (523-625)||(36732278-36732380)
chr5 (566-636)||(23885000-23885073)
[»] chr6 (1 HSPs)
chr6 (838-969)||(31272965-31273098)
[»] chr8 (1 HSPs)
chr8 (906-969)||(18551835-18551900)


Alignment Details
Target: chr1 (Bit Score: 884; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 884; E-Value: 0
Query Start/End: Original strand, 8 - 969
Target Start/End: Complemental strand, 9804040 - 9803077
Alignment:
Q  8 ataaggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaactt 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9804040 ataaggtcaactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaactt 9803941  T
Q  108 gagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatggaggatgtaacggtgatgtagactctgatttg 207  Q
     | || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9803940 tatagattttatcgtcgatgattttgatgtatctagttgtcaagtcacctctagcatgtcccaagatggaggatgtaatggtgatgtagactctgatttg 9803841  T
Q  208 aataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggacatgaactttggcaagatattatcggaaattc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9803840 aataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggacatgaactttggcaagatattctcggaaattc 9803741  T
Q  308 agaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctat 407  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803740 tgaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctat 9803641  T
Q  408 ttatcaacaacaaacttctggggaacaggtgatcaagggaacatttttccataacgagcgtggatttaacaagcatgatgctctcaggtaggaataaaaa 507  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803640 ttatcgacaacaaacttctggggaacaggtgatcaagggaacatttttccgtaacgagcgtggatttaacaagcatgatgctctcaggtaggaataaaaa 9803541  T
Q  508 atagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803540 atagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaat 9803441  T
Q  608 attttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttcttcatctcctcttcctccttctttcatttaaaa 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9803440 attttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttcttcatctcctcttcctccttctttcatttacaa 9803341  T
Q  708 tactcctgagtcttcgaccagaaaatcttcaagaactaagcatccgccaccacatctcaaaggttatgtttcccattcatcatcttctaatactgtaaat 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803340 tactcctgagtcttcgaccagaaaatcttcaagaactaagcatccgctaccacatctcaaaggttatgtttcccattcatcatcttctaatactgtaaat 9803241  T
Q  808 actgctacttatcctatttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaat 907  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803240 actgctacttatcctatttctcatttgctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaat 9803141  T
Q  908 catatgttgaggctag-aaatttgattg-ttgaataaagccatggagaccgaacttacagctct 969  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  9803140 catatgttgaggctagaaaatttgattgtttgaataaagctatggagactgaacttacagctct 9803077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 69 - 394
Target Start/End: Complemental strand, 9828821 - 9828499
Alignment:
Q  69 atcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcc 168  Q
    |||||||||||||||||||||||| || |||||||||| || ||||||||| || ||||||||||||||||||||| |||||||||||||||||| |||     
T  9828821 atcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtca 9828722  T
Q  169 caagatggaggatgtaacggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatg 268  Q
    ||||||||||||  ||| |||||||| |||||||||||||||||||  || ||||||||| |||   ||||||| |||||||||||| |  ||| || ||    
T  9828721 caagatggaggacataatggtgatgtcgactctgatttgaataacttacaagatttacaagatc---atagcaaggattctgattcgagtgatgcatctg 9828625  T
Q  269 atgaggacatgaactttggcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgg 368  Q
    | |||| ||| |||||  | |||||||  ||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||  | || ||    
T  9828624 acgagggcattaacttaagtaagatatattccaaaattcagaggaaaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgctgacttcgg 9828525  T
Q  369 gaaggatcctgtgttatgtatgaagg 394  Q
     |||||||  ||||||||||||||||    
T  9828524 aaaggatcaagtgttatgtatgaagg 9828499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 9755346 - 9755197
Alignment:
Q  69 atcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcc 168  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||||| || |||||||||||| ||||| || |||||||||||||||||| |||     
T  9755346 atcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttgatttatctggttgtgaagtcacctctagcaagtca 9755247  T
Q  169 caagatggaggatgtaacggtgatgtagactctgatttgaataactcgca 218  Q
    |||||||||||| |||| |||||||| ||||||||||||||| |||||||    
T  9755246 caagatggaggacgtaatggtgatgtggactctgatttgaatgactcgca 9755197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 815 - 908
Target Start/End: Complemental strand, 37738235 - 37738142
Alignment:
Q  815 cttatcctatttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatc 908  Q
    |||| |||||||| ||||   |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37738235 cttaccctatttcacattacttgtcttataataaattgtctaatgatcaccttcattttgctttgtctctcaccactcacactgagcctaaatc 37738142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 523 - 624
Target Start/End: Complemental strand, 37738521 - 37738420
Alignment:
Q  523 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 622  Q
    |||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  37738521 tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt 37738422  T
Q  623 ca 624  Q
    ||    
T  37738421 ca 37738420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 816 - 949
Target Start/End: Original strand, 25126184 - 25126317
Alignment:
Q  816 ttatcctatttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgtt 915  Q
    |||||| |||||| ||||||| || || |||||||| || ||||||| | |||||||| ||||||| ||||  ||||||  |||||| ||||||||||||    
T  25126184 ttatccaatttctaattttctttcctacaataaattttccaatgctcgtattcatttttctttgtccctcataactcac--tgagccaaaatcatatgtt 25126281  T
Q  916 gaggctag-aaatttgattgtt-gaataaagccatg 949  Q
    |||||||| ||||||||||||| |||||||||||||    
T  25126282 gaggctagtaaatttgattgttggaataaagccatg 25126317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 314 - 394
Target Start/End: Complemental strand, 9813790 - 9813710
Alignment:
Q  314 aaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaagg 394  Q
    |||||||||| |||||||||||||||| ||||||||| |||| |||| | || || |||||||||||||||||||||||||    
T  9813790 aaaagaagcataaaattaagtgggaatcggaggttgaaatgcgtgcagacttcggaaaggatcctgtgttatgtatgaagg 9813710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 895 - 963
Target Start/End: Original strand, 26214495 - 26214565
Alignment:
Q  895 actgagcctaaatcatatgttgaggctag-aaatttgattgtt-gaataaagccatggagaccgaacttac 963  Q
    ||||||||||||||||||| | | ||||| ||||||||||||| |||||| ||||||||||| ||||||||    
T  26214495 actgagcctaaatcatatgctcatgctagtaaatttgattgttggaataaggccatggagactgaacttac 26214565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 9755392 - 9755356
Alignment:
Q  8 ataaggtccactatcagcaaagtattccaacaaatga 44  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9755392 ataaggtcaactatcagcaaagtattccaacaaatga 9755356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 9828867 - 9828831
Alignment:
Q  8 ataaggtccactatcagcaaagtattccaacaaatga 44  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9828867 ataaggtcaactatcagcaaagtattccaacaaatga 9828831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 427
Target Start/End: Complemental strand, 9824248 - 9824163
Alignment:
Q  342 ggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctatttatcaacaacaaacttctg 427  Q
    |||||||||||||| |||| | || || ||||||||||||| ||||||||||| ||| || | | ||| || ||| ||||||||||    
T  9824248 ggaggttgagatgcatgcagacttcggaaaggatcctgtgtaatgtatgaaggctgtatgtgttctttttcgacagcaaacttctg 9824163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 2e-95; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 523 - 969
Target Start/End: Original strand, 18476614 - 18477059
Alignment:
Q  523 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 622  Q
    |||||||| |||||||||| ||||||||| || |||||||| ||||| |||||||||||| |||||||  |||||||||||||||| ||||||||||||     
T  18476614 tctagagaaatattcatctatagaaatgtcatctttcatgatcatattcttccttatcctacttcttcaatgaagaatttggaataatttccattttctc 18476713  T
Q  623 catctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttcttcatctcctcttcctccttctttcatttaaaatactcctgagtcttc 722  Q
    ||||||| |||||| || |||| ||  || ||  | |||| |||||  |||| |||||||| |||||| ||||||||||| | | | |   |||||||||    
T  18476714 catctcaatcttcttctccatc-ttcatcacc--taaaccttctcctttttcatcatctccccttccttcttctttcattgatactccaattgagtcttc 18476810  T
Q  723 gaccagaaaatcttcaagaactaagcatccgccaccacatctcaaaggttatgtttcccattcatcatcttctaatactgtaaatactgctacttatcct 822  Q
     ||||||||||||||  ||| ||||||||| |||||||||||||||| |||| ||| |||| | ||||||||||| ||||| ||||||||||||||| ||    
T  18476811 caccagaaaatcttcttgaattaagcatccaccaccacatctcaaagattatatttgccatccttcatcttctaacactgttaatactgctacttatgct 18476910  T
Q  823 atttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgttgaggcta 922  Q
    |||||| |||||||  |||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  18476911 atttctaattttctaacatataataatttgtataatactcatcttcattttgcattgtctctcaccactcacactgagcctaaatcatattttgaggcta 18477010  T
Q  923 g-aaatttgattgtt-gaataaagccatggagaccgaacttacagctct 969  Q
    | |  |||| ||||| || ||||||||| ||||| ||||||| ||||||    
T  18477011 gcatgtttggttgttggattaaagccatagagactgaacttaaagctct 18477059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 532 - 969
Target Start/End: Complemental strand, 19814388 - 19813970
Alignment:
Q  532 atattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagt 631  Q
    |||||||| |||| ||||||| | || ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19814388 atattcatttctaaaaatgttgttttccatgatcatatacttccttgtccttcttcttttgtgaagaatttggaatattttccattttcttcatctcagt 19814289  T
Q  632 cttctacttcatcatttgtctcccttgaaccatctcccatttcttcatctcctcttcctccttctttcatttaaaatactcctgagtcttcgaccagaaa 731  Q
      ||| ||||||||| ||| || | | || | ||||| ||||||               ||||| |||||| | | || |  ||||||||| ||||||||    
T  19814288 tatctccttcatcatctgtttcacctaaaacctctcctatttct---------------ccttccttcattgacactattgttgagtcttctaccagaaa 19814204  T
Q  732 atcttcaagaactaagcatccgccaccacatctcaaaggttatgtttcccattcatcatcttctaatactgtaaatactgctacttatcctatttctcat 831  Q
    ||| ||||||||||||||||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| | ||||||      |||||||||||  ||    
T  19814203 atcctcaagaactaagcatccaccaccacatctcaaagactatgtttgccactcatcatcttctaatactatcaatact------tatcctatttccaat 19814110  T
Q  832 tttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgttgaggctag-aaatttg 930  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| | |||||| |||||||||||||||||||| || ||||    
T  19814109 tttctgtcatataataaactgtctaatgctcatcttcattttgctttgtctatcactactcatattgagcccaaatcatatgttgaggctagcaagtttg 19814010  T
Q  931 attgtt-gaataaagccatggagaccgaacttacagctct 969  Q
    |||||| ||||||||| |||||||| || |||||| ||||    
T  19814009 attgttggaataaagctatggagactgagcttacaactct 19813970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 815 - 961
Target Start/End: Original strand, 3004209 - 3004357
Alignment:
Q  815 cttatcctatttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgt 914  Q
    |||| |||||||| |||| | |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||      
T  3004209 cttaccctatttcccattatttgtcttataataaattgtctaatgatcaccttcattttgctttgtctctcaccactcacactgagcctaaatcctatac 3004308  T
Q  915 tgaggctag-aaatttgattgtt-gaataaagccatggagaccgaactt 961  Q
    |||||| || || ||||| |||| ||| || ||||||||||| ||||||    
T  3004309 tgaggccagtaagtttgactgttggaacaaggccatggagactgaactt 3004357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 523 - 624
Target Start/End: Original strand, 3003923 - 3004024
Alignment:
Q  523 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 622  Q
    |||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  3003923 tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt 3004022  T
Q  623 ca 624  Q
    ||    
T  3004023 ca 3004024  T

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Target: scaffold0432 (Bit Score: 162; Significance: 7e-86; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 162; E-Value: 7e-86
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 7368 - 7033
Alignment:
Q  10 aaggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaacttga 109  Q
    |||||| ||||||| ||||||||||||||||||||| | |||| ||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  7368 aaggtcaactatcatcaaagtattccaacaaatgaatatgctcgtgataatgatgctggatcaatagaggacttatcacaaagtgaagaaggaaacttga 7269  T
Q  110 gaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatg--gaggatgtaacggtgatgtagactctgatttg 207  Q
     ||||||||| || |||||||||||| |||||||  |||||||| ||||||||| ||| ||||| |  ||||| ||||||||||||| |||||||||||     
T  7268 aaggttttattgttgatgattttgatatatctagctgtgaagtcgcctctagcaagtcacaagaaggagaggacgtaacggtgatgtggactctgattta 7169  T
Q  208 aataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatgaggacatgaactttggcaagatattatcggaaattc 307  Q
    ||| ||||||||||||||||| |||   || |||| |||||| |||||  |||||||| |||||||||||| |||||||| |||| ||||||  ||||||    
T  7168 aatgactcgcatgatttacaagatc---atggcaaggattctaattcgcacaatgtatctgatgaggacattaactttggtaagaaattatctaaaattc 7072  T
Q  308 agaggaaaaagaagcacaaaattaagtgggaattggagg 346  Q
    ||||||||| ||||||||||||||| |||| | ||||||    
T  7071 agaggaaaaggaagcacaaaattaattggggagtggagg 7033  T

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Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 817 - 961
Target Start/End: Original strand, 23681512 - 23681658
Alignment:
Q  817 tatcctatttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgttg 916  Q
    ||||||||||| |||| | |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||  ||    
T  23681512 tatcctatttcccattatttgtcttataataaattgtctaatgatcaccttcattttgctttgtctctcaccactcacactgagcctatatcctatactg 23681611  T
Q  917 aggctag-aaatttgattgtt-gaataaagccatggagaccgaactt 961  Q
    ||||||| || ||||| |||| ||| || ||||||||||| ||||||    
T  23681612 aggctagtaagtttgactgttggaacaaggccatggagactgaactt 23681658  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 523 - 624
Target Start/End: Original strand, 23681221 - 23681322
Alignment:
Q  523 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 622  Q
    |||||||| || || |||||||||||| | || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  23681221 tctagagaaatctttatctctagaaatataatttttcatgatcatattcttccttatcctccttcatctgacaagaatttggaatattttcctttttctt 23681320  T
Q  623 ca 624  Q
    ||    
T  23681321 ca 23681322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 815 - 923
Target Start/End: Complemental strand, 36732094 - 36731986
Alignment:
Q  815 cttatcctatttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgt 914  Q
    |||| |||||||| |||| | |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||      
T  36732094 cttaccctatttcacattatttgtcttataataaattgtctaatgatcaccttcattttgctttgtctctcaccactcacactgagcctaaatcctatac 36731995  T
Q  915 tgaggctag 923  Q
    |||||||||    
T  36731994 tgaggctag 36731986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 815 - 963
Target Start/End: Complemental strand, 23884906 - 23884756
Alignment:
Q  815 cttatcctatttctcattttctgtcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgt 914  Q
    ||||||| ||||| |||| | |||| ||||||||||| ||||||  |||  |||| ||||| ||||||||||||||||| |||||||||||||| ||||     
T  23884906 cttatcccatttcccattatttgtcttataataaattttctaatcatcacattcactttgcattgtctctcaccactcatactgagcctaaatcttatgc 23884807  T
Q  915 tgaggctag-aaatttgattgtt-gaataaagccatggagaccgaacttac 963  Q
    |  |||||| || ||||| |||| ||| || ||||||||||| ||||||||    
T  23884806 tagggctagtaagtttgactgttggaacaaggccatggagactgaacttac 23884756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 523 - 625
Target Start/End: Complemental strand, 36732380 - 36732278
Alignment:
Q  523 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 622  Q
    |||||||| || || || ||||||||||| || |||||||| ||||| |||||||||||| |||| |||   |||||||||||||||||||| |||||||    
T  36732380 tctagagaaatctttatatctagaaatgtaatttttcatgatcatattcttccttatcctccttcatcttaaaagaatttggaatattttcctttttctt 36732281  T
Q  623 cat 625  Q
    |||    
T  36732280 cat 36732278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 566 - 636
Target Start/End: Complemental strand, 23885073 - 23885000
Alignment:
Q  566 atatacttccttatccttcttcttctgtgaagaat---ttggaatattttccattttcttcatctcagtcttct 636  Q
    |||| ||||||||||||||||| |||| |||||||   ||||||||||||||||||||||||  ||||||||||    
T  23885073 atattcttccttatccttcttcatctgagaagaataatttggaatattttccattttcttcacttcagtcttct 23885000  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 838 - 969
Target Start/End: Original strand, 31272965 - 31273098
Alignment:
Q  838 tcatataataaattgtctaatgctcatcttcattttgctttgtctctcaccactcacactgagcctaaatcatatgttgaggctag-aaatttgattg-t 935  Q
    |||||||||||||||||||||   ||||| ||||||| ||| || ||    || |||| ||||||||||||||||| |||| |||| ||||||||||| |    
T  31272965 tcatataataaattgtctaatcaacatctccattttgttttttcccttcaaacacacattgagcctaaatcatatgatgagcctagtaaatttgattgat 31273064  T
Q  936 tgaataaagccatggagaccgaacttacagctct 969  Q
     |||||| | ||||||||| |||||||| |||||    
T  31273065 ggaataaggtcatggagactgaacttactgctct 31273098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 906 - 969
Target Start/End: Complemental strand, 18551900 - 18551835
Alignment:
Q  906 atcatatgttgaggctagaaa-tttgattgttg-aataaagccatggagaccgaacttacagctct 969  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||| || ||||||| ||||||    
T  18551900 atcatatgttgaggctagcaagtttgattgttggaataaagccatggacactgaacttaaagctct 18551835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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