View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615-Insertion-3 (Length: 1065)
Name: NF5615-Insertion-3
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 814; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 8 - 941
Target Start/End: Complemental strand, 18220206 - 18219274
Alignment:
| Q |
8 |
gttattggttattctattgattgagttattgcttacttttcttgatctgcaaacagagaaatgagggagctcacatcaaaaagagaagaggaagcattgg |
107 |
Q |
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| T |
18220206 |
gttattggttattctattgattgagttattgcttacttttcttgatctgcaaacagagaaatgagggagctcacatcaaaaagagaagaggaagcattgg |
18220107 |
T |
|
| Q |
108 |
ctcttgtgactactcctagttcttgtatgtcaagtttgaattttgaggaccatggttcccaggtttctaagcaggtgagaggaagcatagtagtaccagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220106 |
ctcttgtgactactcctagttcttgtatgtcaagtttgaattttgaggactatggttcccaggtttctaagcaggtgagaggaagcatagtagtaccagc |
18220007 |
T |
|
| Q |
208 |
tcattgctaacggttaacatgaatagtaaagttgggactgggaatttgggaggtcaaataacatatagacaacagtagcttttaataatgattttatctg |
307 |
Q |
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| T |
18220006 |
tcattgctaacggttaacatgaatagtaaagttgggactgggaatttgggaggtcacatgacatatagacaacagtagcttttaataatgattttatctg |
18219907 |
T |
|
| Q |
308 |
ttgaattgcaggatatttatttggagctggttcataaaaaggctaaaattgaagaacagctaaaagaaatttctttggcattgaatggcatggaggtaac |
407 |
Q |
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| T |
18219906 |
ttgaattgcaggatatttatttggagctggttcataaaaaggctaaaattgaagaacagctaaaagaaatttctttggcattgaatggcatggaggtaac |
18219807 |
T |
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| Q |
408 |
atatataaactctttattctattgagtgctcattgattgaatgttttcattgcaaaatcattatgctacctaccttcatcagaatacaataaaataatga |
507 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219806 |
atatataaactctttattttattgagtgctcattgattgaatgttttcattgcaaaataattatgctacctaccttcatcagaatacaataaaataatga |
18219707 |
T |
|
| Q |
508 |
tgctaatgattgctttgtgatattctatggagagctcataggattgagtgttttcattgcaaaataatgatgttatgattgctatgaactttaccctcaa |
607 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219706 |
tgctaatgattgcgttgtaatattctatggagagctcataggattgagtgttttcattgcaaaataatgatgttatgattgctatgaactttaccctcaa |
18219607 |
T |
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| Q |
608 |
aaatctatatttatttgttcagagtgtaccatagagtatgaacagaactataagaaatcccattatgatattgtgtgatgttacttgttatagtttactt |
707 |
Q |
| |
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| T |
18219606 |
aaatctatatttattagtccagagtgtaccatagagtatgaacagaattataa-aaatcccattatgatattgtgtgatgttgcttgttatattttactt |
18219508 |
T |
|
| Q |
708 |
tacattctcatccatctatgccaataaatgttgaagactgatgaaaatcaatactgtaattactgtctttcaagctaactgaaaaggattttgcttgcca |
807 |
Q |
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|| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| | ||||| ||||||| |
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| T |
18219507 |
tatattcccatccatctatccgaataaatgttgaagactgatgaaaatcaatactgtaattactggctttcaacctaaatgaaatgaatttttcttgcca |
18219408 |
T |
|
| Q |
808 |
ctgatgaaaagcacttaatgcaggatcaaataggaatgctgaaaccaacactagtagaagaaccacaaatgtcagaatcattaacaccaccagcgttatt |
907 |
Q |
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| T |
18219407 |
ctgatgaaatgcacttaatgtaggatcaaatgggaatgctgaaaccaacactagtagaagaaccacaaatgtcagaatcattaacaccaccagtgttatt |
18219308 |
T |
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| Q |
908 |
gctaggaccaacatcattgacagaaagcattgga |
941 |
Q |
| |
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||| |||||||||||||||||||||| ||||||| |
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| T |
18219307 |
gcttggaccaacatcattgacagaaaacattgga |
18219274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 163 - 596
Target Start/End: Complemental strand, 43011873 - 43011444
Alignment:
| Q |
163 |
ttcccaggtttctaagcaggtgagaggaagcatagtagtaccagctcattgctaacggttaacatgaatagtaaagttgggactgggaatttgggaggtc |
262 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
43011873 |
ttcccaggtttctaagcaggtgaggggaagcatagtagtcccagctcattgctaacaattaacatgaatagtaaaa-----actgggaatttgggaggtc |
43011779 |
T |
|
| Q |
263 |
aaataacatatagacaacagtagcttttaataatgattttatctgttgaattgcaggatatttatttggagctggttcataaaaaggctaaaattgaaga |
362 |
Q |
| |
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| || ||||||||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43011778 |
acatgtcatatagacaacagtagtttttaataattattctatctgttatatttcaggatatttatttggagctggttcataaaaaggctaaaattgaaga |
43011679 |
T |
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| Q |
363 |
acagctaaaagaaatttctttggcattgaatggcatggaggtaacatatataaactctttattctattgag-tgctcattgattgaatgttttcattgca |
461 |
Q |
| |
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| T |
43011678 |
acagctaaaagaaatttctttggcattgaatggcatggaggtaacatatataaactctttattttattgagctgcttattgattgaattttttcaatgca |
43011579 |
T |
|
| Q |
462 |
aaatcattatgctacctaccttcatcagaatacaataaaataatgatgctaatgattgctttgtgatattctatggagagctcataggattgagtgtttt |
561 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||| ||||| |
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| T |
43011578 |
aaataattatgctacctacattcatcagaatacaataaaataatgatgctgatgattgctttgaaatattctattgagaggtcataggattgagcgtttt |
43011479 |
T |
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| Q |
562 |
cattgcaaaataatgatgttatgattgctatgaac |
596 |
Q |
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||||||||||||||||| ||||||||| ||||||| |
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| T |
43011478 |
cattgcaaaataatgattttatgattggtatgaac |
43011444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 808 - 873
Target Start/End: Complemental strand, 43011287 - 43011222
Alignment:
| Q |
808 |
ctgatgaaaagcacttaatgcaggatcaaataggaatgctgaaaccaacactagtagaagaaccac |
873 |
Q |
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| T |
43011287 |
ctgatgaaaagcacttaacgcaggatcaaatgggaatgctgaaaccaacactagtagaagaaccac |
43011222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 701 - 763
Target Start/End: Complemental strand, 43011365 - 43011303
Alignment:
| Q |
701 |
tttactttacattctcatccatctatgccaataaatgttgaagactgatgaaaatcaatactg |
763 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43011365 |
tttactttatattctcatccatctatgcgaataaatgttgaagactgatgaaaatcaatactg |
43011303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 893 - 967
Target Start/End: Complemental strand, 43011226 - 43011150
Alignment:
| Q |
893 |
accaccagcgttattgctaggaccaacatcattgacagaaagcattggaca-gagac-agggaggaagagaaaggta |
967 |
Q |
| |
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| T |
43011226 |
accaccagcgtcattgcttggaccaacatcattgacagaaaacattggacatgagacaagggaggaagagaaaggta |
43011150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 43011988 - 43011907
Alignment:
| Q |
8 |
gttattggttattctattgatt--gagttattgcttacttttcttgatctgcaaacagagaaatgagggagctcacatcaaa |
87 |
Q |
| |
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|||||||||||||||||||||| || |||| | ||||||||||||||||||||||| |||||||||||||| | |||||| |
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| T |
43011988 |
gttattggttattctattgattttgatttatcacatacttttcttgatctgcaaacagtgaaatgagggagctaaaatcaaa |
43011907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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