View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615-Insertion-4 (Length: 997)
Name: NF5615-Insertion-4
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 22828736 - 22829167
Alignment:
| Q |
8 |
ttgaacacataaactaatgagctttatgattctccgtgcttaaaacctctcctttttcaattctccatnnnnnnnccaaggctgtaacagctttcaccat |
107 |
Q |
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| T |
22828736 |
ttgaacacataaactgatgagctttatgattctccgtgcttaaaacctctcctttttcaattctccattaaaaaaccaaggctgtaacagctttcaccat |
22828835 |
T |
|
| Q |
108 |
tcacaaatccaatacccatggtttagtcattgcttaatctccctcttct-gattccaagtacccattaacccttaatcatcactcctatcaaacatgcaa |
206 |
Q |
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| T |
22828836 |
tgacaaatccaatacccatggttcagtcattgcttaatcttcctcttcttgatttcaagtacccattaacccttaatcatcactctaatcaaacatgcaa |
22828935 |
T |
|
| Q |
207 |
tggtacttgcttatcaattcttcaaattatcaaagaagggaggaaggtgggcactcgatagagacaaggaagaaaatagaaggattaggtttgcattaag |
306 |
Q |
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| T |
22828936 |
tggtagttgcttttcaattcttcaaattatcaaagaagggaggaaggtgggaactcgacagagagagggaagaaaatagaaggattaggcttgcattaag |
22829035 |
T |
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| Q |
307 |
gctcaatgttataaggagttctttgcattgattgcatgttgatttttaacttgttttgatgaagaatttgaaagaatgatgagggagggatggaggccga |
406 |
Q |
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| T |
22829036 |
gctcaatgttataaggagttctttgcattgattgaatgttgatttttaacttgttttgatgaagaatttgaaagaatgatgggggagggatggaggccga |
22829135 |
T |
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| Q |
407 |
gaggttagagagaatgagagggagtggagttc |
438 |
Q |
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| T |
22829136 |
gaggttagagagaatgagagagagtggagttc |
22829167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 589 - 993
Target Start/End: Original strand, 22829411 - 22829820
Alignment:
| Q |
589 |
gtgacaattaccaaaatatccttcgtattaatcgtccacaaatcgacattgataactgaacctgcttgactgacactgctctgataatatcctttgttat |
688 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22829411 |
gtgataattaccaaaatatccttcgtattaatcgtccacaaatcgacattgataactgaacctgcttgactgacactgctttgataatatcctttgttat |
22829510 |
T |
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| Q |
689 |
acctatcgttcatggtttgatacattcgattggtaaaacgcccctagttgatgagcgggatattagacatcctttctaaaactgataagggtttaaaaat |
788 |
Q |
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| T |
22829511 |
acctatcattcatggtttgatacattcgattggtaaaacacccctagttgatgagcgggatattagacatcctttctaaaattgataagggttaaaaaat |
22829610 |
T |
|
| Q |
789 |
gatgtaagaaaagaaatcttaacatgataacatagaaacgtcac--aaaattgttgaaagat-aaaatgtaggatgttttgacttgttgaaagaaataga |
885 |
Q |
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| T |
22829611 |
gatgtaagagaagaaatcttaacatgataacaaagaaacgtcacaaaaaattgttgaaagataaaaatataggatgttttgacttgttgaaagaaataga |
22829710 |
T |
|
| Q |
886 |
tgttgaacttgctgcaaattagctacataaagatgaaaacatggttnnnnnnntaaatgatg-aaaatcgatgcagctcccttttgctactgtcact-ct |
983 |
Q |
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| T |
22829711 |
tgttgaacctgctgcaaattagctacatatagatgaaaacatggttaaaaaaataaatgatgaaaaatcgatgcagcacccttttgctactgtcactcct |
22829810 |
T |
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| Q |
984 |
cacagttgtt |
993 |
Q |
| |
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| T |
22829811 |
cacagttgtt |
22829820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 756 - 993
Target Start/End: Original strand, 22837293 - 22837533
Alignment:
| Q |
756 |
catcctttctaaaactgataagggtttaaaaatgatgtaagaaaagaaatcttaacatgataacatagaaacgtcacaaaattgttgaaagat-aaaatg |
854 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |
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| T |
22837293 |
catcctttctaaaactgataagggtttaaaaatgatgtaagagaagaaatcttaacatgataacaaagaaacgtcacaaaattgttgaaatataaaaatg |
22837392 |
T |
|
| Q |
855 |
taggatgttttgacttgttgaaagaaatagatgttgaacttgctgcaaattagctacataaagatgaaaacatggttnnnnnnntaaatgatgaa-aatc |
953 |
Q |
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| T |
22837393 |
taggatgttttgacttgttgaaagaaatagatgttgaacctgctgcaaattagctacatatagatgaaatcatggttgaaaaaataaattatgaataatc |
22837492 |
T |
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| Q |
954 |
gatgcagctcccttttgctactgtcact-ctcacagttgtt |
993 |
Q |
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| T |
22837493 |
gatgtagcacccttttgctactgtgactcctcacagttgtt |
22837533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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