View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_high_1 (Length: 668)
Name: NF5615_high_1
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 269 - 661
Target Start/End: Complemental strand, 34641955 - 34641564
Alignment:
| Q |
269 |
aacttcgatttcatggtctagttgtcgtcgtggaccttttataagtgatatgttgaacttctttaatttccataaaatctctcaaaacttaaactctcaa |
368 |
Q |
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| T |
34641955 |
aacttcgatttcatggtctagttgtagtcatggaccttttataagtgatatgttgaacttctttaatttccataaaatctctcaaaacttaaactctcaa |
34641856 |
T |
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| Q |
369 |
tagaagtttatgattggaagaggatggagatcaagattatagacatgatgttgcatatataattgtatttggatttgctgccctttccacatcgcaaagt |
468 |
Q |
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| T |
34641855 |
tagaagtttatgattggaagaggatggagatcaagattatagacatgatgttgcatatataattgtatttggatttgctgcccttgccgcatcacatagt |
34641756 |
T |
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| Q |
469 |
ttttaatatcatctatctcaaataaatgttcgagatcatttaaagcttattttattattgtataatttgagttgttcgaacccatattaatgatcgagaa |
568 |
Q |
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| T |
34641755 |
ttttaatatcacccatctcaaataaatgttcgagatcatttaaagctaattttattattgtgtaatttaagtcgtccgaacccatattaatgatcgagaa |
34641656 |
T |
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| Q |
569 |
tgtttaccgcatgcaaacacnnnnnnnncgagcaaataatccagatccatctgtcttctcactgcaggtgtagtcaacgatagtcctttgctt |
661 |
Q |
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| T |
34641655 |
tgtttaccgcatgtaaacac-tttttttcgagcaaataatccagatccatctgtcttctcactgcaggtgtagtccacgatagtcctttgctt |
34641564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 34642130 - 34641955
Alignment:
| Q |
19 |
gggaccaacctatatatttatgtctccaaatcttaccagaaattagcgttgttaattaaatgtaacnnnnnnnnnagatgataccattcaatttcagttt |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34642130 |
gggaccaacctatatatttatttctccaaatcttaccagaaattagtgttgttaattaaatgtat-tttttttttagatgataccattcaatttcagttt |
34642032 |
T |
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| Q |
119 |
ccatagaaagaaacaagacccacctaatttctagtgaatttacagataaaggttttaaattgtggttgcaatcatta |
195 |
Q |
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| T |
34642031 |
ccatagaaagaaacaagacccacttaatttctagtgaatttatagataaaggttttaaattgtggttgcaatcatta |
34641955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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