View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_high_10 (Length: 307)
Name: NF5615_high_10
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 37293253 - 37292960
Alignment:
| Q |
1 |
ccaactaccaacattaggctttcaacccacattacaatggctattagcaatgaaatgaagtatagaaaatgttctagtcctttgtgcattttacaaagtt |
100 |
Q |
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| T |
37293253 |
ccaactaccaacattaggctttcaacccacattacaatggctattagcaatgaaatgaagtatagaaaatgctctagtcctttgtgcattttacaaagtt |
37293154 |
T |
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| Q |
101 |
ggtatgctattccgccaggtatcactgagatcattattatgtaaggtagtgaagagaatatatttccaatcagaaaagcagtaacgccatagtgtccatt |
200 |
Q |
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| T |
37293153 |
ggtatgctattcctccaggtatcactgagatcattattatgtaaggtagtgaagagaatatatttccaatcagaaaagcagtaacgccatagtgtccatt |
37293054 |
T |
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| Q |
201 |
caatctctctcgttcaaatacctgacagatgaa-aaaagaaaatacattttcatttagattattgctaaactaaaaggagttaaggaccgatgt |
293 |
Q |
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| T |
37293053 |
caatctctctcgttcaaatacctgacagatgaaaaaaagaaaatacattttcatttagattattgctaaactaaaaggagttaaggaccgatgt |
37292960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 37300662 - 37300590
Alignment:
| Q |
151 |
gaagagaatatatttccaatcagaaaagcagtaacgccatagtgtccattcaatctctctcgttcaaatacct |
223 |
Q |
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||||| |||||||| ||||| ||||||||||||| |||||||| ||||| ||||||||||||| |||||||| |
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| T |
37300662 |
gaagataatatattgccaatgagaaaagcagtaataccatagtgcccatttaatctctctcgtttaaatacct |
37300590 |
T |
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