View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_high_11 (Length: 302)
Name: NF5615_high_11
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 5326242 - 5326501
Alignment:
| Q |
14 |
gagagcaacaatcttaatcacccttgccattatttgttatcaatatatgttccaaatgcaaattgtaaattgtaaatgaattgatttgttttgttattga |
113 |
Q |
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| T |
5326242 |
gagagcaacaatcttaatcacccttgccattatttgttatcaatatgt--------tgcaagttgtagattgtaaatgaat-gatttgttttgttattga |
5326332 |
T |
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| Q |
114 |
aaagaatgtgnnnnnnnnnnnnnnnnngatggtgctcgtaaatattatattacgtggggtatagtaaatggtaataacatatatatccttgttgttgcca |
213 |
Q |
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| T |
5326333 |
aaagaatgtgatatatttatatata--gatggtgctcgtaaatattatattacgtagggcatagtaaatggtaataacatatatatccttgttgttgcca |
5326430 |
T |
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| Q |
214 |
gattctaaattccaaattggattcgtgctacaattttaaattctccagttgcaatggcaaaagtatagtgt |
284 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| |
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| T |
5326431 |
gattctaaattccaaattggattcgtgcttcaattttaaattacccggttgcaatggcaaaagtatagtgt |
5326501 |
T |
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