View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_high_16 (Length: 257)
Name: NF5615_high_16
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_high_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 15140282 - 15140523
Alignment:
| Q |
16 |
gttttctcatataatccctttgaccattcattcatttacatgnnnnnnn-gttgaaaaatgtagaaactcatgattttttcttcttctattttctattga |
114 |
Q |
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| T |
15140282 |
gttttctcatataatccctttgaccattcattcatttacatgaaaaaaaagttgaaaaatgtagaaactcatgatttttt-ttcttctattttctattga |
15140380 |
T |
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| Q |
115 |
ggtattaatgatttagattacctaataacttcatcatttattgctttcatttcttgacagtgacacacattgctatctccatgatttcctaaacggattc |
214 |
Q |
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| T |
15140381 |
ggtattaatgatttagattacctaataacttcatcatttattgctttcatttcttgacagtgacacacattgctatctccatgatttcctaaacggattc |
15140480 |
T |
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| Q |
215 |
ttcctgtgtaatgtttgtacctcaacctaacattgcctttgtt |
257 |
Q |
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| T |
15140481 |
ttcctgtgtaatgtttgtacctcaacctaacattgcttttgtt |
15140523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 31282510 - 31282415
Alignment:
| Q |
103 |
attttctattgaggtattaatgatttagattacctaataacttcatcatttattgctttcatttcttgacagtgacacacattgctatctccatga |
198 |
Q |
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| T |
31282510 |
attttctgttgaactattagtgatttagaatacctcataacttcatcgtttatttctttcatttcttcacagtgacatatattgttatctccatga |
31282415 |
T |
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