View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_high_18 (Length: 227)
Name: NF5615_high_18
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_high_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39290500 - 39290274
Alignment:
| Q |
1 |
tcatcatgctcttctttatttaattaacacttggaactctcaatgaaccagtgttacaatactagtnnnnnnnnnnnnnnnnnnnntaagtttctactat |
100 |
Q |
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| T |
39290500 |
tcattatgctcttctttatttaattaacacttggaactctcaatgaaccagtgttacaaaactagttactactactactactactataagtttctactat |
39290401 |
T |
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| Q |
101 |
aggtaaacaaaagtaacttaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaattacttgccttaaaattttgtgtaattttgagcca |
200 |
Q |
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| T |
39290400 |
aggtaaacaaaagtaactaaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaattacttgccttaaaattttgtgtaattttgagcca |
39290301 |
T |
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| Q |
201 |
ttcaagagtcccaaattggaccaaatg |
227 |
Q |
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| T |
39290300 |
ttcaagagtcccaaattggaccaaatg |
39290274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 39297221 - 39297156
Alignment:
| Q |
157 |
agtaacaaattacttgccttaaaattttgtgtaattttgagccattcaagagtcccaaattggaccaaa |
225 |
Q |
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| T |
39297221 |
agtaacaaattacttgccttacaagtttttgt---ttagaacctttcaagagtcccaaattggaccaaa |
39297156 |
T |
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