View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5615_high_5 (Length: 383)

Name: NF5615_high_5
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5615_high_5
NF5615_high_5
[»] chr8 (8 HSPs)
chr8 (27-366)||(9577436-9577779)
chr8 (43-120)||(13135572-13135649)
chr8 (43-119)||(18668979-18669055)
chr8 (43-118)||(13117838-13117913)
chr8 (43-120)||(13009787-13009864)
chr8 (44-120)||(13011028-13011104)
chr8 (43-120)||(26442007-26442084)
chr8 (52-112)||(11537262-11537322)
[»] chr7 (5 HSPs)
chr7 (43-118)||(41866260-41866335)
chr7 (44-119)||(28261753-28261828)
chr7 (45-120)||(48918555-48918630)
chr7 (52-112)||(31656835-31656895)
chr7 (52-112)||(29218221-29218281)
[»] chr5 (4 HSPs)
chr5 (45-118)||(15369476-15369549)
chr5 (45-118)||(16946302-16946375)
chr5 (44-112)||(19732067-19732135)
chr5 (60-112)||(34693775-34693827)
[»] scaffold0971 (1 HSPs)
scaffold0971 (44-120)||(1335-1411)
[»] chr6 (1 HSPs)
chr6 (42-118)||(29022863-29022939)
[»] chr2 (5 HSPs)
chr2 (44-120)||(2388806-2388882)
chr2 (52-112)||(35514112-35514171)
chr2 (52-112)||(3449566-3449625)
chr2 (52-112)||(38377299-38377358)
chr2 (53-112)||(1211740-1211799)
[»] chr4 (7 HSPs)
chr4 (44-119)||(23458688-23458763)
chr4 (45-120)||(56191433-56191508)
chr4 (45-119)||(56435056-56435130)
chr4 (45-118)||(42636393-42636466)
chr4 (52-112)||(20916804-20916863)
chr4 (53-112)||(31032755-31032813)
chr4 (54-112)||(35534150-35534207)
[»] chr1 (2 HSPs)
chr1 (45-118)||(45764995-45765068)
chr1 (52-112)||(36904656-36904715)
[»] scaffold0899 (1 HSPs)
scaffold0899 (45-120)||(2451-2526)
[»] chr3 (2 HSPs)
chr3 (52-112)||(26379277-26379336)
chr3 (52-112)||(29383688-29383747)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 27 - 366
Target Start/End: Complemental strand, 9577779 - 9577436
Alignment:
Q  27 agaaaaaataaagatgaatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatgcttgt 126  Q
    |||| ||| |||| ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9577779 agaagaaaaaaagttgattggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatgcttgt 9577680  T
Q  127 tgttgggcttaaatttattgaatttgggtaagtagttatatttattggtgataaataacaaaatattagctttacg-ttttcggctgcatttgcatatat 225  Q
    | ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9577679 tattgggcttaaatttattgaatttgcctaagtagttatatttattggttataaataacaaaatattagctttacgtttttcggctgcatttgcatatat 9577580  T
Q  226 attgttgagtttannnnnnnngattgaatatattttgttgttcagatttcaactc--aacaatatttttattcacctttggacc-ttttttagtcatatc 322  Q
    |||||||| ||||        ||  ||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  9577579 attgttgattttattttttttgagagaatatattttgttgttcacatttaaactcaaaacaatatttttattcacctttggacctttttttagtcatatc 9577480  T
Q  323 attctattttattttaccaaatgtataatacctataggaaatgg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9577479 attctattttattttaccaaatgtataatacctataggaaatgg 9577436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 13135649 - 13135572
Alignment:
Q  43 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13135649 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 13135572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 18668979 - 18669055
Alignment:
Q  43 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18668979 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 18669055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 13117913 - 13117838
Alignment:
Q  43 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13117913 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 13117838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 13009787 - 13009864
Alignment:
Q  43 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13009787 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtaataaccaactacaccacgaaaccat 13009864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 13011028 - 13011104
Alignment:
Q  44 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13011028 atggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 13011104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 26442007 - 26442084
Alignment:
Q  43 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    ||||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26442007 aatggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 26442084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 11537322 - 11537262
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| |||||||||||||||  ||||||| |||||  |||||||||| ||||||||||    
T  11537322 gcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccac 11537262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 41866260 - 41866335
Alignment:
Q  43 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41866260 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 41866335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 28261753 - 28261828
Alignment:
Q  44 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28261753 atggcttcgcccaggctagaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 28261828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 48918555 - 48918630
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    ||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48918555 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 48918630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 31656835 - 31656895
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  31656835 gcccaggttcgaactggggacctttagtgtgtgagactaacgtgataaccaactacaccac 31656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 29218221 - 29218281
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| |||||||||||||||  ||||||| |||||  |||||||||||||||||||||    
T  29218221 gcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccaactacaccac 29218281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 15369549 - 15369476
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15369549 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 15369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 16946302 - 16946375
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 118  Q
    ||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16946302 tggcttcgcccggactcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 16946375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 19732067 - 19732135
Alignment:
Q  44 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||| |||||| | || |||| || |||||||||||||||||||||||||||||||||||||||||||    
T  19732067 atggcgtcgcccggacttgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 19732135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 34693775 - 34693827
Alignment:
Q  60 tcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    |||||| ||||||||  ||||||| |||||  |||||||||||||||||||||    
T  34693775 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 34693827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 1335 - 1411
Alignment:
Q  44 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    |||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1335 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 1411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 29022939 - 29022863
Alignment:
Q  42 gaatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 118  Q
    |||||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29022939 gaatggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 29022863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 2388882 - 2388806
Alignment:
Q  44 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    |||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2388882 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 2388806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 35514171 - 35514112
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  35514171 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 35514112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 3449566 - 3449625
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  3449566 gcccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 3449625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 38377358 - 38377299
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  38377358 gcccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 38377299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 1211740 - 1211799
Alignment:
Q  53 cccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    |||||| |||||||||||||||  ||||||| |||||  |||||||||| ||||||||||    
T  1211740 cccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccac 1211799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 23458688 - 23458763
Alignment:
Q  44 atggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 119  Q
    |||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458688 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 23458763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 56191433 - 56191508
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    ||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56191433 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 56191508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 56435130 - 56435056
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 119  Q
    ||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56435130 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 56435056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 42636466 - 42636393
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 118  Q
    ||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42636466 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 42636393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 20916804 - 20916863
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  20916804 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 20916863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 31032813 - 31032755
Alignment:
Q  53 cccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  31032813 cccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 31032755  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 35534207 - 35534150
Alignment:
Q  54 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  35534207 ccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 35534150  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 45764995 - 45765068
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 118  Q
    ||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45764995 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 45765068  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 36904656 - 36904715
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  36904656 gcccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 36904715  T

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Target: scaffold0899 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 2526 - 2451
Alignment:
Q  45 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 120  Q
    ||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2526 tggcttcgccctggttcaaactggagaccttcagtgtgttagactgacgtgataaccaactacaccactaaaccat 2451  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 26379277 - 26379336
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  26379277 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 26379336  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 29383747 - 29383688
Alignment:
Q  52 gcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 112  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  29383747 gcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 29383688  T

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