View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5615_high_6 (Length: 376)

Name: NF5615_high_6
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5615_high_6
NF5615_high_6
[»] chr4 (3 HSPs)
chr4 (13-250)||(44302342-44302579)
chr4 (140-217)||(42576917-42576994)
chr4 (297-359)||(44302233-44302295)
[»] chr5 (4 HSPs)
chr5 (142-220)||(28601930-28602008)
chr5 (160-219)||(32147125-32147184)
chr5 (189-221)||(12895033-12895065)
chr5 (189-225)||(15898311-15898347)
[»] chr8 (3 HSPs)
chr8 (141-218)||(15196499-15196576)
chr8 (184-217)||(36309454-36309487)
chr8 (141-217)||(38125584-38125660)
[»] chr2 (3 HSPs)
chr2 (142-219)||(36887319-36887396)
chr2 (184-220)||(12890262-12890298)
chr2 (191-219)||(19246531-19246559)
[»] scaffold0009 (1 HSPs)
scaffold0009 (141-217)||(143350-143426)
[»] chr7 (1 HSPs)
chr7 (142-217)||(19989079-19989154)
[»] chr1 (2 HSPs)
chr1 (167-218)||(59660-59711)
chr1 (185-217)||(32152117-32152149)
[»] chr3 (1 HSPs)
chr3 (167-217)||(25124720-25124770)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 44302579 - 44302342
Alignment:
Q  13 aatatcgtaatccatttccattaagtgaaaacaaagctttgaaatgtgggtgaaattccttcgtttaatatttttattttaatctagtttttaaagaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||    
T  44302579 aatatcgtaatccatttccattaagtgaaaacaaagctttgaaatgtgggtgaaattccttcgtttaatatttttactttaaacttgtttttaaagaatg 44302480  T
Q  113 ataaaattgtaaaggatttagataagagatacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || ||| |||| ||||||||||| |||||||||||||||||||  ||||||||    
T  44302479 ataaaattgtaaaggatttagataagagatacttcctccgttcttatatttaagcacccttttattagaggaaaaagatgcttagatatagagacggagg 44302380  T
Q  213 gagtataattgaagaagaaaagttataccaaactcaga 250  Q
     ||||||||||||||| |||||||||||||||||||||    
T  44302379 aagtataattgaagaaaaaaagttataccaaactcaga 44302342  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 42576994 - 42576917
Alignment:
Q  140 gatacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 217  Q
    |||||| ||||||||| || |||||| ||||||||||||||||  |||   |||||| ||||||| ||||||||||||    
T  42576994 gatactccctccgttcctatatctaagcaccattttattagaggcaaattgtgcttatatataagaacggagggagta 42576917  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 44302295 - 44302233
Alignment:
Q  297 gcttaaagtgaatcgagatcttgannnnnnnaggtaaaaatgaaaagaagctattcctaattc 359  Q
    ||||||||||||| ||||||||||       ||||||||||| ||||||||||||||||||||    
T  44302295 gcttaaagtgaattgagatcttgatttttttaggtaaaaatgtaaagaagctattcctaattc 44302233  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 28601930 - 28602008
Alignment:
Q  142 tacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtataa 220  Q
    |||||||||||||| || |||||| |||| |||||||||||| ||| | |||||| |||| ||||| ||||||||||||    
T  28601930 tacttcctccgttcttatatctaagcacccttttattagagataaatggtgcttatatatcaggacagagggagtataa 28602008  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 32147125 - 32147184
Alignment:
Q  160 atctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtata 219  Q
    |||||||||||||||||||||||  ||| |||||||| |||||| || |||| |||||||    
T  32147125 atctaaacaccattttattagaggcaaatgatgcttacatataaagatggagagagtata 32147184  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 12895065 - 12895033
Alignment:
Q  189 gatgcttagatataaggacggagggagtataat 221  Q
    |||||||||||||| ||||||||||||||||||    
T  12895065 gatgcttagatatagggacggagggagtataat 12895033  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 15898347 - 15898311
Alignment:
Q  189 gatgcttagatataaggacggagggagtataattgaa 225  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  15898347 gatgcttagatatagggacggagggagtataagtgaa 15898311  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 15196576 - 15196499
Alignment:
Q  141 atacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtat 218  Q
    ||||| ||||||| | || |||||| |||| ||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  15196576 atactccctccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagggacggagggagtat 15196499  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 36309487 - 36309454
Alignment:
Q  184 aaaaagatgcttagatataaggacggagggagta 217  Q
    ||||||||||||||||||||||||| ||||||||    
T  36309487 aaaaagatgcttagatataaggacgaagggagta 36309454  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 38125660 - 38125584
Alignment:
Q  141 atacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 217  Q
    ||||| ||||||| | || || ||| |||| |||||||||||  ||||| |||||| ||||| ||||||||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatatatggacggagggagta 38125584  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 36887396 - 36887319
Alignment:
Q  142 tacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtata 219  Q
    |||| ||||||| | || || ||||||||||||||||| || ||||| ||||||| |||||  |||||||||||||||    
T  36887396 tactccctccgtccctatatgtaaacaccattttattataggaaaaaaatgcttacatatatagacggagggagtata 36887319  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 12890298 - 12890262
Alignment:
Q  184 aaaaagatgcttagatataaggacggagggagtataa 220  Q
    |||| |||||||||||||| |||||||||||||||||    
T  12890298 aaaaggatgcttagatatagggacggagggagtataa 12890262  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 19246531 - 19246559
Alignment:
Q  191 tgcttagatataaggacggagggagtata 219  Q
    |||||||||||||||||||||||||||||    
T  19246531 tgcttagatataaggacggagggagtata 19246559  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 143350 - 143426
Alignment:
Q  141 atacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 217  Q
    |||||||||| || | || || |||||||| |||||||||||  ||| |||||||| ||||| ||||||||||||||    
T  143350 atacttcctctgtccctatatgtaaacacccttttattagaggcaaaggatgcttacatatagggacggagggagta 143426  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 19989154 - 19989079
Alignment:
Q  142 tacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 217  Q
    |||||||||||| | || |||||| ||||||||||||||||  ||| | |||||| ||||| | ||||||||||||    
T  19989154 tacttcctccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacggagggagta 19989079  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 59660 - 59711
Alignment:
Q  167 caccattttattagagaaaaaagatgcttagatataaggacggagggagtat 218  Q
    ||||||||||||||||| ||| | |||||| ||||| |||||||||||||||    
T  59660 caccattttattagagataaatggtgcttatatatagggacggagggagtat 59711  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 32152149 - 32152117
Alignment:
Q  185 aaaagatgcttagatataaggacggagggagta 217  Q
    ||||| |||||||||||||||||||||||||||    
T  32152149 aaaaggtgcttagatataaggacggagggagta 32152117  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 25124720 - 25124770
Alignment:
Q  167 caccattttattagagaaaaaagatgcttagatataaggacggagggagta 217  Q
    |||| |||||||||||  ||| |||||||| ||||||||||||||||||||    
T  25124720 cacccttttattagaggtaaatgatgcttatatataaggacggagggagta 25124770  T

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