View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_high_7 (Length: 365)
Name: NF5615_high_7
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_high_7 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 125 - 352
Target Start/End: Complemental strand, 9804273 - 9804036
Alignment:
| Q |
125 |
ctatatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgc |
224 |
Q |
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| T |
9804273 |
ctatatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctgaaatgcaaggtagtggaggtatttctctgccaacaagttctgc |
9804174 |
T |
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| Q |
225 |
agcagaaaagggaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag- |
323 |
Q |
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| T |
9804173 |
agcagaaaagcgaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaagg |
9804074 |
T |
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| Q |
324 |
---------aatgtgtaagcaaaattcatggtgataag |
352 |
Q |
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| T |
9804073 |
ctcaaatgaaatgtgtaagcaaaattcatggtgataag |
9804036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 149 - 323
Target Start/End: Complemental strand, 9814003 - 9813828
Alignment:
| Q |
149 |
gtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttta |
247 |
Q |
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| T |
9814003 |
gtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagtggaagtatttctctgtcaacaaattctgcagcagaaaagggaaagaattttta |
9813904 |
T |
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| Q |
248 |
ctccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag |
323 |
Q |
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| T |
9813903 |
ctccaattaggatcaaatcaatgacgaaaaatctgattttataaggaggaagaaagtgagtaggctccgtctcaag |
9813828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9817000 - 9816909
Alignment:
| Q |
1 |
cataattacactatacgtatcacttatacactattgtttttt-ataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat |
91 |
Q |
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| T |
9817000 |
cataattacactatacgtatcacttatatactattgtttttttataagtcatttttctgaatatgcaaatttgacttagtattgtcatacat |
9816909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 9829294 - 9829154
Alignment:
| Q |
148 |
agtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttt |
246 |
Q |
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| T |
9829294 |
agtaacaagaattctaattttcaagatgtatctgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgt |
9829195 |
T |
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| Q |
247 |
actccaattatgatcaaaacaatgaggaaatttctgatttt |
287 |
Q |
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| T |
9829194 |
actccaattatgatcaaagcaacgaggaagattctgatttt |
9829154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 9804373 - 9804307
Alignment:
| Q |
17 |
gtatcacttatacactattgttttttataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat |
91 |
Q |
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| T |
9804373 |
gtatcacttatacactattgttttttataagtc--------gaatatgcaaatttgacttagtattgtcatacat |
9804307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 9755830 - 9755702
Alignment:
| Q |
160 |
tcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaagggaa-gaacttttactccaattatg |
258 |
Q |
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| T |
9755830 |
tcttattttcaagatgtgtctgatatgcaaggcagtgaatatatttctcagtcaacatgttctgcaacaaaaaagggaaagaatttgtactccaattatg |
9755731 |
T |
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| Q |
259 |
atcaaaacaatgaggaaatttctgatttt |
287 |
Q |
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| T |
9755730 |
atcaaagcagtgaggaagattctgatttt |
9755702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 11136 - 11046
Alignment:
| Q |
1 |
cataattacactatacgtatcacttatacactattgttttttataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat |
91 |
Q |
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| T |
11136 |
cataattacactccacgtatcagttatacaatatttttttttataagtcatttttctaaataagcaaatttgacttggtattgtcatacat |
11046 |
T |
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