View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_low_12 (Length: 301)
Name: NF5615_low_12
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 10100652 - 10100381
Alignment:
| Q |
12 |
aatacttagatatcacaaaatcactaatattttatttgcaaagtacttacagcatcagtcatgtaagctttatcaggatcatcgacaatttgagagagtg |
111 |
Q |
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| T |
10100652 |
aatacttagatatcacaaaatcactaatattt-atttgcaaagtacttacagcatcagtcatgtaagctttatcaggatcatcgacaatttgagagagtg |
10100554 |
T |
|
| Q |
112 |
ttccatcataatctaagaacacaacaatctttttctctcttgcaatgttcatcactttttcaaaattttccaatgctgaagggtggttttcctttaagca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
10100553 |
ttccatcataatctaagaacacaacaatctttttctctcttgcaatgttcatcactttttcaaaattttccaatgcagaaggatggttttcctttaagca |
10100454 |
T |
|
| Q |
212 |
aaagagttaatacatcagtggattttagatta-gaaaaaagcaaatattgtaaaagcaatatgaagaatgaac |
283 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
10100453 |
aaagagttaatacatcagtggattttagattataaaaaaaacaaatattgtaaaagcaatatgaagaatgaac |
10100381 |
T |
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