View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_low_16 (Length: 261)
Name: NF5615_low_16
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 36552492 - 36552675
Alignment:
| Q |
14 |
agacgaggctgtgagggtaaagcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgt |
113 |
Q |
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| T |
36552492 |
agacgaggctgtgagggtaaagcaactggcggaaactaagatgcaaattggtgaatttgtagag--gcactgaagtttgctaacaaggccaaaaagctgt |
36552589 |
T |
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| Q |
114 |
atgctgatgttgaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatg |
199 |
Q |
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| T |
36552590 |
atgctgatgttgaaaacattgctcagatccttactgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatg |
36552675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 36524666 - 36524871
Alignment:
| Q |
35 |
gcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgtatgctgatgttgaaaacattg |
134 |
Q |
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| T |
36524666 |
gcaactggcggaaagtagaatgcaaaggggtgaatttgtagag--gcactgaagtttgctaacaaggccaaaacgatgtatgctgatgttgaaaacattg |
36524763 |
T |
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| Q |
135 |
ctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctctc |
234 |
Q |
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| T |
36524764 |
ctcagatccttactgtttgtgaggttcacaatgctgcacttaacaagctgtctaagtctgatatggactggtatggaattcttcagacagaaagtctctc |
36524863 |
T |
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| Q |
235 |
cgaggaag |
242 |
Q |
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| T |
36524864 |
cgaggaag |
36524871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 36530999 - 36531184
Alignment:
| Q |
33 |
aagcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgtatgctgatgttgaaaacat |
132 |
Q |
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| T |
36530999 |
aagcaactggcagaaactaaaatgcaaaggggtgaatttgtagat--gcactgaagtttgctaacaaggccaaaaggctctatgctgatgttgaaaacat |
36531096 |
T |
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| Q |
133 |
tgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcag |
220 |
Q |
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| T |
36531097 |
tgctcagatccttgctgtttgtgaggttcacaatgctgcactcaacaagctgtctaagtatgatatggactggtatggagttcttcag |
36531184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 26306355 - 26306133
Alignment:
| Q |
18 |
gaggctgtgagggtaaagcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgtatgc |
117 |
Q |
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| T |
26306355 |
gaggctgtaagggctaaacaactggcggaaactaaaatgcaaaggggtgaattcgtagat--gcactgaagtttgctaaaaaggccaaaaatctgtatgc |
26306258 |
T |
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| Q |
118 |
tgatgttgaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattctt |
217 |
Q |
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| T |
26306257 |
tggtgtggaaaacattgctcaggtccttgcagtttgtgaggttcacattgctgcactgaagaaactctctatgtttgaaatggactattatgaaattctt |
26306158 |
T |
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| Q |
218 |
caggcagaaagtctctccgaggaag |
242 |
Q |
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| T |
26306157 |
cagacacatagattctccgaggaag |
26306133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 20716342 - 20716253
Alignment:
| Q |
152 |
tgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctctccgaggaa |
241 |
Q |
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| T |
20716342 |
tgtgaggttcacaatgctgcactcagcaaactctctaggtgtgaaatggactggtatgaaattcttcagacagaaagactctccgaggaa |
20716253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 47090764 - 47090698
Alignment:
| Q |
152 |
tgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttc |
218 |
Q |
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| T |
47090764 |
tgtgaggttcactgtgctgcacagaacaaactctctatgtctgatatggactggtatggaattcttc |
47090698 |
T |
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