View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5615_low_18 (Length: 228)

Name: NF5615_low_18
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5615_low_18
NF5615_low_18
[»] chr1 (33 HSPs)
chr1 (1-122)||(42831943-42832064)
chr1 (16-122)||(19793537-19793643)
chr1 (1-122)||(20357456-20357576)
chr1 (1-122)||(20562379-20562499)
chr1 (1-122)||(46116152-46116273)
chr1 (1-101)||(23463985-23464085)
chr1 (3-122)||(4429460-4429579)
chr1 (16-122)||(15368816-15368922)
chr1 (16-122)||(37733766-37733872)
chr1 (1-122)||(38019925-38020047)
chr1 (1-94)||(538335-538428)
chr1 (1-122)||(15774290-15774411)
chr1 (24-101)||(18309567-18309644)
chr1 (1-122)||(48110525-48110646)
chr1 (1-44)||(23930600-23930643)
chr1 (16-94)||(15051558-15051636)
chr1 (16-122)||(49251373-49251479)
chr1 (1-122)||(3532952-3533072)
chr1 (1-122)||(12073055-12073176)
chr1 (1-122)||(37490886-37491007)
chr1 (5-93)||(4354112-4354200)
chr1 (66-122)||(39994826-39994882)
chr1 (3-47)||(43513999-43514043)
chr1 (4-96)||(43555878-43555970)
chr1 (26-122)||(47939177-47939272)
chr1 (1-44)||(18923941-18923984)
chr1 (1-122)||(47763363-47763485)
chr1 (2-44)||(29442023-29442065)
chr1 (1-58)||(9408656-9408713)
chr1 (2-90)||(29491466-29491555)
chr1 (2-90)||(38021248-38021337)
chr1 (6-94)||(17889062-17889150)
chr1 (1-101)||(49916436-49916536)
[»] chr8 (37 HSPs)
chr8 (1-122)||(43468683-43468804)
chr8 (1-116)||(15042349-15042464)
chr8 (1-86)||(25119204-25119289)
chr8 (1-101)||(9524953-9525053)
chr8 (1-101)||(24608482-24608582)
chr8 (1-122)||(40249856-40249979)
chr8 (1-122)||(14010750-14010871)
chr8 (1-101)||(9737359-9737459)
chr8 (1-116)||(39484354-39484469)
chr8 (5-111)||(5184876-5184982)
chr8 (16-122)||(24074517-24074623)
chr8 (4-122)||(25689366-25689484)
chr8 (1-122)||(8682377-8682498)
chr8 (16-101)||(8740655-8740740)
chr8 (5-94)||(10970266-10970355)
chr8 (5-122)||(13762490-13762607)
chr8 (1-122)||(17987427-17987548)
chr8 (1-101)||(34073238-34073338)
chr8 (26-90)||(35301173-35301237)
chr8 (1-85)||(40329220-40329304)
chr8 (4-44)||(42688055-42688095)
chr8 (3-103)||(42761862-42761962)
chr8 (1-44)||(2376514-2376557)
chr8 (1-44)||(23857380-23857423)
chr8 (1-44)||(28465614-28465657)
chr8 (1-44)||(29108658-29108701)
chr8 (1-44)||(31373316-31373359)
chr8 (1-44)||(41225721-41225764)
chr8 (2-111)||(14012608-14012718)
chr8 (1-94)||(1032967-1033059)
chr8 (1-122)||(4798519-4798640)
chr8 (16-101)||(26703889-26703974)
chr8 (24-96)||(3747860-3747932)
chr8 (4-44)||(9578058-9578098)
chr8 (1-45)||(25689502-25689546)
chr8 (4-44)||(43847701-43847741)
chr8 (12-122)||(44360915-44361022)
[»] chr6 (27 HSPs)
chr6 (1-122)||(34396079-34396200)
chr6 (1-122)||(12089093-12089214)
chr6 (16-116)||(9438313-9438413)
chr6 (1-111)||(7563565-7563675)
chr6 (4-101)||(15288954-15289051)
chr6 (1-94)||(21507207-21507300)
chr6 (1-122)||(30566054-30566175)
chr6 (4-122)||(12127887-12128005)
chr6 (1-122)||(9491713-9491834)
chr6 (1-101)||(22389749-22389849)
chr6 (1-101)||(35190759-35190859)
chr6 (3-101)||(5288344-5288442)
chr6 (16-122)||(18904661-18904767)
chr6 (18-112)||(26528580-26528674)
chr6 (1-42)||(34365731-34365772)
chr6 (1-93)||(8233082-8233174)
chr6 (17-101)||(12101898-12101982)
chr6 (6-94)||(31741469-31741557)
chr6 (1-44)||(19642603-19642646)
chr6 (6-44)||(858139-858176)
chr6 (16-122)||(19165362-19165467)
chr6 (20-101)||(23771048-23771129)
chr6 (2-90)||(24470401-24470490)
chr6 (5-85)||(6296923-6297003)
chr6 (5-85)||(6303733-6303813)
chr6 (16-52)||(24623533-24623569)
chr6 (6-122)||(25020506-25020622)
[»] chr5 (24 HSPs)
chr5 (5-122)||(29096286-29096403)
chr5 (1-122)||(32158392-32158513)
chr5 (1-116)||(7645086-7645201)
chr5 (16-101)||(26169013-26169096)
chr5 (16-122)||(30403761-30403867)
chr5 (12-92)||(34010542-34010622)
chr5 (16-116)||(42455378-42455478)
chr5 (1-116)||(27219547-27219662)
chr5 (5-112)||(29144142-29144249)
chr5 (15-101)||(14487571-14487657)
chr5 (1-122)||(18872517-18872636)
chr5 (3-109)||(26302485-26302590)
chr5 (1-122)||(2029106-2029227)
chr5 (1-122)||(19058982-19059103)
chr5 (16-101)||(20762292-20762377)
chr5 (16-116)||(6561909-6562009)
chr5 (1-101)||(20945890-20945990)
chr5 (4-51)||(29841347-29841394)
chr5 (1-96)||(33800889-33800984)
chr5 (4-122)||(18478002-18478120)
chr5 (5-42)||(30394569-30394606)
chr5 (13-49)||(22863777-22863813)
chr5 (1-72)||(35112962-35113033)
chr5 (1-93)||(39760070-39760162)
[»] chr3 (41 HSPs)
chr3 (1-122)||(33206753-33206874)
chr3 (1-101)||(49146080-49146180)
chr3 (16-116)||(32876100-32876200)
chr3 (1-101)||(42271012-42271112)
chr3 (1-122)||(14417864-14417985)
chr3 (1-94)||(16277957-16278050)
chr3 (1-122)||(45713476-45713597)
chr3 (27-122)||(362965-363060)
chr3 (3-101)||(48173284-48173382)
chr3 (1-122)||(17439943-17440064)
chr3 (1-86)||(32665277-32665362)
chr3 (1-122)||(43566774-43566895)
chr3 (1-101)||(13539963-13540063)
chr3 (1-101)||(35483265-35483365)
chr3 (4-116)||(40786279-40786391)
chr3 (1-44)||(50720418-50720461)
chr3 (1-44)||(50792387-50792430)
chr3 (2-122)||(47191369-47191490)
chr3 (1-122)||(50724364-50724484)
chr3 (1-122)||(50788364-50788484)
chr3 (1-120)||(16006486-16006605)
chr3 (1-44)||(21420245-21420288)
chr3 (26-101)||(35477752-35477827)
chr3 (6-121)||(38682237-38682352)
chr3 (1-44)||(49639024-49639067)
chr3 (3-101)||(335029-335127)
chr3 (3-85)||(29507215-29507297)
chr3 (16-101)||(23820640-23820725)
chr3 (68-121)||(28206516-28206569)
chr3 (17-122)||(39492833-39492938)
chr3 (16-96)||(41121882-41121963)
chr3 (2-90)||(42823995-42824084)
chr3 (70-119)||(48558751-48558800)
chr3 (77-122)||(48821036-48821081)
chr3 (1-101)||(13874833-13874932)
chr3 (16-44)||(17269374-17269402)
chr3 (1-101)||(32508793-32508893)
chr3 (4-44)||(34503214-34503254)
chr3 (16-96)||(47062071-47062150)
chr3 (12-44)||(53467956-53467988)
chr3 (1-45)||(54983764-54983808)
[»] chr2 (32 HSPs)
chr2 (1-101)||(17115543-17115643)
chr2 (20-122)||(44422122-44422224)
chr2 (16-122)||(16028086-16028192)
chr2 (1-122)||(580761-580882)
chr2 (1-122)||(1836584-1836705)
chr2 (1-86)||(38530208-38530294)
chr2 (1-122)||(22538535-22538656)
chr2 (1-93)||(27495534-27495626)
chr2 (1-116)||(8234776-8234891)
chr2 (20-122)||(19905633-19905735)
chr2 (2-122)||(11133072-11133193)
chr2 (1-122)||(17154645-17154766)
chr2 (4-101)||(34620517-34620614)
chr2 (1-86)||(36520794-36520879)
chr2 (4-44)||(9791951-9791991)
chr2 (1-93)||(10262735-10262827)
chr2 (1-121)||(20122454-20122574)
chr2 (1-101)||(30474194-30474294)
chr2 (5-101)||(36426855-36426951)
chr2 (16-122)||(31956877-31956984)
chr2 (3-58)||(36481067-36481122)
chr2 (20-94)||(18386818-18386892)
chr2 (16-122)||(32891292-32891398)
chr2 (16-122)||(32943350-32943456)
chr2 (16-122)||(44721682-44721788)
chr2 (12-93)||(18007256-18007337)
chr2 (4-93)||(22297459-22297548)
chr2 (17-82)||(35502091-35502156)
chr2 (32-89)||(39334892-39334949)
chr2 (1-101)||(2114434-2114534)
chr2 (3-58)||(27016278-27016333)
chr2 (1-53)||(31564091-31564143)
[»] chr7 (22 HSPs)
chr7 (4-122)||(47552212-47552330)
chr7 (1-122)||(21925471-21925592)
chr7 (4-94)||(30152740-30152830)
chr7 (16-122)||(35368407-35368513)
chr7 (1-94)||(22706034-22706127)
chr7 (15-115)||(38792222-38792322)
chr7 (16-122)||(24396956-24397062)
chr7 (16-94)||(21086115-21086193)
chr7 (1-86)||(49012394-49012479)
chr7 (1-101)||(7262997-7263097)
chr7 (1-101)||(30644165-30644265)
chr7 (1-44)||(8195911-8195954)
chr7 (1-96)||(38778683-38778778)
chr7 (1-44)||(46337924-46337967)
chr7 (3-101)||(2261483-2261581)
chr7 (16-122)||(2366368-2366474)
chr7 (1-90)||(31475850-31475940)
chr7 (32-101)||(4042267-4042336)
chr7 (1-45)||(25087005-25087049)
chr7 (1-101)||(25818282-25818382)
chr7 (1-101)||(42887150-42887250)
chr7 (1-45)||(45197314-45197358)
[»] chr4 (41 HSPs)
chr4 (3-122)||(12856182-12856301)
chr4 (3-101)||(32885686-32885784)
chr4 (4-101)||(34773682-34773779)
chr4 (1-101)||(47017945-47018045)
chr4 (1-116)||(21476065-21476180)
chr4 (16-101)||(3465594-3465679)
chr4 (1-122)||(9924852-9924973)
chr4 (4-101)||(26203786-26203883)
chr4 (1-101)||(13211351-13211451)
chr4 (1-93)||(45350272-45350364)
chr4 (1-93)||(45359751-45359843)
chr4 (1-44)||(43115264-43115307)
chr4 (1-44)||(50783490-50783533)
chr4 (3-101)||(3544431-3544529)
chr4 (16-94)||(16201307-16201385)
chr4 (1-122)||(9172349-9172470)
chr4 (2-90)||(40150469-40150558)
chr4 (1-102)||(49089275-49089376)
chr4 (1-94)||(55656114-55656207)
chr4 (26-90)||(11872894-11872958)
chr4 (1-93)||(26253948-26254040)
chr4 (21-121)||(44074869-44074969)
chr4 (1-44)||(20266858-20266901)
chr4 (17-116)||(35332972-35333071)
chr4 (1-44)||(46735025-46735068)
chr4 (1-44)||(50657876-50657919)
chr4 (12-122)||(38433318-38433428)
chr4 (2-122)||(48968188-48968309)
chr4 (1-94)||(55266443-55266534)
chr4 (1-122)||(29269293-29269413)
chr4 (67-112)||(33536287-33536332)
chr4 (4-122)||(8690212-8690331)
chr4 (1-101)||(9285658-9285758)
chr4 (2-121)||(12820384-12820504)
chr4 (1-101)||(24234073-24234173)
chr4 (4-44)||(35031382-35031422)
chr4 (26-122)||(41003150-41003245)
chr4 (32-112)||(46222881-46222960)
chr4 (1-36)||(47678628-47678664)
chr4 (1-101)||(53291438-53291538)
chr4 (6-54)||(55345765-55345813)
[»] scaffold1086 (1 HSPs)
scaffold1086 (1-122)||(2484-2605)
[»] scaffold0178 (2 HSPs)
scaffold0178 (18-94)||(16078-16154)
scaffold0178 (4-101)||(4322-4419)
[»] scaffold0533 (1 HSPs)
scaffold0533 (12-122)||(9333-9443)
[»] scaffold0343 (1 HSPs)
scaffold0343 (18-111)||(8573-8666)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-101)||(101827-101927)


Alignment Details
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 42831943 - 42832064
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| || ||| ||| || ||||| ||||||| || |||||||||| ||||||||| |||    
T  42831943 tcccgtgagcatagctcagttggtaggacattgcattattatatgcaggggctggggttcaaaccccggacaccccacttattcaccttataaggtgaat 42832042  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  |  ||||||||||||||||    
T  42832043 tctagtcactaggctatctgac 42832064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 19793537 - 19793643
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| || |||  ||| | | ||| ||||||| || |||||||||| ||||||||| ||||  ||||||||||||    
T  19793537 tcagttggtaggacaatgcattattatatgcaggggccggaattcgaaccccggacaccccacttattcaccttataaggtgaattctaaccactaggct 19793636  T
Q  116 atctgac 122  Q
    | |||||    
T  19793637 acctgac 19793643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20357456 - 20357576
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || ||| ||| || | ||| ||||||| |  |||||||||| ||||||||| |||    
T  20357456 tcccgtgagcataactcagttggtaggacaatgcattattatatgcaggggctggggttcgaac-ccggacaactaacttattcaccttataaggtgaat 20357554  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  |||||||||| ||||||||    
T  20357555 tctaaccactaggttatctgac 20357576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 20562499 - 20562379
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || ||| ||| || | ||| ||||||| |  |||||||||| ||||||||| |||    
T  20562499 tcccgtgagcataactcagttggtaggacaatgcattattatatgcaggggctggggttcgaac-ccggacaactaacttattcaccttataaggtgaat 20562401  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  |||||||||| ||||||||    
T  20562400 tctaaccactaggttatctgac 20562379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 46116273 - 46116152
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| | ||||||||||||| |||||||| |||| || ||| ||| || | ||| ||||||| || | |||||||| ||||||||| |||    
T  46116273 tcccgtgagcatagcttagttggtaggacaatgcattatcatatgcaggggctggggttcgaaccccggacaccccaattattcaccttataaggtgaat 46116174  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  ||||||||||||| |||||    
T  46116173 tctaaccactaggctacctgac 46116152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 23464085 - 23463985
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||| || |||  || || | ||| ||||||| || |||| ||||||||||||||| |||    
T  23464085 tcccatgagcatagttcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttgttcactttataaggtgaat 23463986  T
Q  101 t 101  Q
    |    
T  23463985 t 23463985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 4429579 - 4429460
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaattt 102  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| || ||||||| || | ||| | | |||| | |||||||||  ||||||||| ||||     
T  4429579 ccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggttggggttcgaaccctgaacattccacttattcatcttataaggtgaattc 4429480  T
Q  103 caaccactaggctatctgac 122  Q
     | ||||||| |||||||||    
T  4429479 tagccactagactatctgac 4429460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 15368816 - 15368922
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| || |||  || || | ||| ||||||| || ||||||||| |||||||||| ||||  | ||||||||||    
T  15368816 tcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcattttataaggtgaattctagccactaggct 15368915  T
Q  116 atctgac 122  Q
    | |||||    
T  15368916 acctgac 15368922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 37733766 - 37733872
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| ||  ||  || || | ||| ||||||| || |||||||||| ||||||||| ||||  ||||||||||||    
T  37733766 tcagttggtaggacaatgcattattatatgcagtggacggggttcgaaccccggacaccccacttattcaccttataaggtgaattctaaccactaggct 37733865  T
Q  116 atctgac 122  Q
    | |||||    
T  37733866 acctgac 37733872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 38020047 - 38019925
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtac-aaactccggacatcctacttattcactttataaggtcaa 99  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  ||||| | |||| || |||| || |||||||||| |||||| || ||    
T  38020047 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggagttcgaaaccccagacaccccacttattcaccttataaagtgaa 38019948  T
Q  100 tttcaaccactaggctatctgac 122  Q
    ||  | ||||||||||| |||||    
T  38019947 ttctagccactaggctacctgac 38019925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 538428 - 538335
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||| || |||  ||||| | ||| ||| ||| || |||||||||| |||||||    
T  538428 tcccgtgagcatagttcagttggtagaacaatgcattattatatgcaggggccggagttcgaaccccgaacaccccacttattcaccttataag 538335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 15774411 - 15774290
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| |||||||||||||  | |||| || || | ||| ||||||| || |||||||||| ||||||||| |||    
T  15774411 tcccgtgagcataactcagttggtaggacaatgcattattatatgtaggggtcggggttcgaaccccggacaccccacttattcaccttataaggtgaat 15774312  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||| |||| |||||    
T  15774311 tctagccactaagctacctgac 15774290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 18309567 - 18309644
Alignment:
Q  24 taggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||| ||||||||||||| || ||||||||||   ||  |||||||||||||||||||||||||| |||| ||||    
T  18309567 taggacaatgcattattatatgcaggggttggagttagaatcccggacatcctacttattcactttatgaggtgaatt 18309644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 48110525 - 48110646
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||| ||| ||||||||||||| || |||||||||| | |||  |||||| |  |||||||||  ||||||||| ||     
T  48110525 tcccgtgagcgtagctcagttggtagaacaatgcattattatatgcaggggttggagttcgaacctcggacacctcacttattcatcttataaggtgaaa 48110624  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  48110625 tctagccactaggctacctgac 48110646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23930643 - 23930600
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  23930643 tcccgtgagcatagttcagttggtaggacaatgcattattatat 23930600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 15051558 - 15051636
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||||||||| ||| ||||||||||||| ||||||| || ||  |||||| ||||| || |||||||||| |||||||    
T  15051558 tcagttggtagaacaatgcattattatatgcaagggtcggggtttaaactctggacaccccacttattcaccttataag 15051636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 49251479 - 49251373
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| || |||| || || | ||| || |||| || |||||||||| |||||| || ||||  |||||||||| |    
T  49251479 tcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcaccttataatgtgaattctaaccactaggtt 49251380  T
Q  116 atctgac 122  Q
    | |||||    
T  49251379 acctgac 49251373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3533072 - 3532952
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| |||||| |||||||| |||||||||||||  | |||| || || | ||| ||||||| || |||||||||| ||||||||| |||    
T  3533072 tcccgtgagcatagctcagttagtaggacaatgcattattatatgtaggggtcgg-gttccaaccccggacaccccacttattcaccttataaggtgaat 3532974  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | | ||||||||| |||||    
T  3532973 tctagctactaggctacctgac 3532952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 12073176 - 12073055
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||| | |||||||||||||  |||| | |  || | ||||||||||| || | |||||||| |||||| || |||    
T  12073176 tcccgtgagcataactcagttggtaggataatgcattattatatctaaggatcgaggttcgaactccggacacccaatttattcaccttataaagtaaat 12073077  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  ||||||||| |||||||||    
T  12073076 tctaaccactagactatctgac 12073055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37490886 - 37491007
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || |||  || |||| |||  |||||| ||  ||||||||  ||||||||| |||    
T  37490886 tcccgtgagcataactcagttggtaggacaatgcattattatatgcaggggccggggtacgaaccacggacaccccgcttattcatcttataaggtgaat 37490985  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  37490986 tctagccactaggctacctgac 37491007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 4354200 - 4354112
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    |||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | |||| |||||| || |||||||||| ||||||    
T  4354200 gtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacttcggacaccccacttattcaccttataa 4354112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 39994882 - 39994826
Alignment:
Q  66 ccggacatcctacttattcactttataaggtcaatttcaaccactaggctatctgac 122  Q
    |||||||||| |||||||||| ||||||||| ||||  | |||||||||||||||||    
T  39994882 ccggacatcccacttattcaccttataaggtgaattctagccactaggctatctgac 39994826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 43513999 - 43514043
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatataca 47  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||    
T  43513999 ccgtgagcatagtttagttggtaggacgttgcattattatataca 43514043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 43555970 - 43555878
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggt 96  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| || || | || || ||||| | ||||| || ||||||| || |||||||||    
T  43555970 cgtgagcatagctcagttggtaggacaatgcattattatatgcagggatcggggttcaaacccaggacaccccacttatttaccttataaggt 43555878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 47939272 - 47939177
Alignment:
Q  26 ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggctatctgac 122  Q
    ||||| |||||| |||||| || ||||||| || | ||||||||||| || |||||||||| |||| |||| ||||  ||||||||||||| |||||    
T  47939272 ggacaatgcattgttatatgca-gggttggggttcgaactccggacaccccacttattcaccttattaggtgaattctaaccactaggctacctgac 47939177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18923984 - 18923941
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  18923984 tcccgtgagcatagctcagttggtaggacaatgcattattatat 18923941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47763485 - 47763363
Alignment:
Q  1 tcccgtgagcttagttcagttggtagg-acattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaa 99  Q
    |||||||||| ||| |||||||| ||| ||| ||||||||||||| || |||  ||||| | |||  ||||||||| |||||||||||||| || || ||    
T  47763485 tcccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggagttcgaacctcggacatcccacttattcacttta-aaagtgaa 47763387  T
Q  100 tttc-aaccactaggctatctgac 122  Q
    |||| | ||||||||||| |||||    
T  47763386 tttctagccactaggctacctgac 47763363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 29442065 - 29442023
Alignment:
Q  2 cccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||    
T  29442065 cccgtgagcatagctcagttggtaggacaatgcattattatat 29442023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9408713 - 9408656
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagt 58  Q
    |||||||||| ||| ||||||||||||||| |||||||||| || || |||| |||||    
T  9408713 tcccgtgagcatagctcagttggtaggacaatgcattattaaatgcaggggtcggagt 9408656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 29491466 - 29491555
Alignment:
Q  2 cccgtgagcttagttcagttggtagg-acattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    ||||||||| ||| |||||||| ||| ||| ||||||||||||| || |||| || || | ||| ||||||| || ||||||||||||||    
T  29491466 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcacttta 29491555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 38021248 - 38021337
Alignment:
Q  2 cccgtgagcttagttcagttggta-ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    ||||||||| ||| |||||||| | ||||| ||||||||||||| || |||  ||||| | ||| ||||||| || ||||||||||||||    
T  38021248 cccgtgagcatagctcagttggcaaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcacttta 38021337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 17889062 - 17889150
Alignment:
Q  6 tgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||||||  ||||||||||||| | || |||||||||| || |  | || || | |||||||||||||| |||||||||| |||||||    
T  17889062 tgagcttaactcagttggtaggataatgtattattatatgcaggaatcggggttcgaactccggacatcccacttattcaccttataag 17889150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49916436 - 49916536
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||| ||||||||||| |||||||||||||  | |||| || || | ||  |||||||||| | |||||||  ||||||||| |||    
T  49916436 tcccgtgagcatagatcaattggtaggacaatgcattattatatgtaggggtcggggttcgaatcccggacatcccatttattcatattataaggtgaat 49916535  T
Q  101 t 101  Q
    |    
T  49916536 t 49916536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 43468804 - 43468683
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| |||||| ||||||  | |||| || || | ||||||||||| || |||||||||| ||||||||| |||    
T  43468804 tcccgtgagcatagctcagttggtaggacaatgcattgttatatgtaggggtcggggttcgaactccggacaccccacttattcaccttataaggtgaat 43468705  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||||||||||||||    
T  43468704 tctagccactaggctatctgac 43468683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 15042464 - 15042349
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | ||| ||||||| || |||||||||| ||||||||| |||    
T  15042464 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaat 15042365  T
Q  101 ttcaaccactaggcta 116  Q
    |  |||||||| ||||    
T  15042364 tctaaccactacgcta 15042349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25119204 - 25119289
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcac 86  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||| || ||||||| || | ||| |||||||||| ||| ||||||    
T  25119204 tcccgtgagcatagttcaattggtaggacaatgcattattatatgcaggggttggggttcgaaccccggacatcccactcattcac 25119289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 9524953 - 9525053
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | ||| || |||| ||||||||||||| ||||||||| |||    
T  9524953 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccctacttattcaccttataaggtgaat 9525052  T
Q  101 t 101  Q
    |    
T  9525053 t 9525053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 24608582 - 24608482
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | ||| || |||| ||||||||||||| ||||||||| |||    
T  24608582 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccctacttattcaccttataaggtgaat 24608483  T
Q  101 t 101  Q
    |    
T  24608482 t 24608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40249979 - 40249856
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggaca--tcctacttattcactttataaggtca 98  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| ||  | | ||||| | |||||||||||  ||| |||||||||| ||||||| | |    
T  40249979 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagtgatcggagttcgaactccggacacctcccacttattcaccttataagatga 40249880  T
Q  99 atttcaaccactaggctatctgac 122  Q
    |||  ||||||||||||| |||||    
T  40249879 attctaaccactaggctacctgac 40249856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 14010871 - 14010750
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| |||||||||| |||| |||||||||||||   | ||| || || | ||| ||||||| || |||||||||| ||||||||| |||    
T  14010871 tcccgtgagcatagctcagttggtaagacagtgcattattatatgttatggtcggggttcgaaccccggacaccccacttattcaccttataaggtaaat 14010772  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||| ||||||||||    
T  14010771 tctagccactaagctatctgac 14010750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 9737459 - 9737359
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| | |||||||||||| | |||  |  || | ||||||||||| || ||||||| |||||||||||| |||    
T  9737459 tcccgtgagcatagctcagttggtaggacaatacattattatatataggggccgaggttcgaactccggacaccccacttatttactttataaggtgaat 9737360  T
Q  101 t 101  Q
    |    
T  9737359 t 9737359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39484469 - 39484354
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | ||  ||||||| || |||||||||  ||||||||| |||    
T  39484469 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaatgccggacaccccacttattcatcttataaggtgaat 39484370  T
Q  101 ttcaaccactaggcta 116  Q
    |  |||||||| ||||    
T  39484369 tctaaccactacgcta 39484354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 5184982 - 5184876
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttca 104  Q
    |||||| ||| ||||||||||||||| || |||||||||| || ||| ||| || | ||| | ||||| || |||||||||| ||||||||| ||||  |    
T  5184982 gtgagcatagctcagttggtaggacaatggattattatatgcaggggctggggttcgaaccctggacaccccacttattcaccttataaggtgaattcta 5184883  T
Q  105 accacta 111  Q
    |||||||    
T  5184882 accacta 5184876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 24074517 - 24074623
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| |||||||||||||  | |||||| ||| | |||  |||||| |  |||||||||| ||||||||| ||||  | ||||||||||    
T  24074517 tcagttggtaggacaatgcattattatatgtaggggttgaagttcgaacctcggacacctcacttattcaccttataaggtgaattctagccactaggct 24074616  T
Q  116 atctgac 122  Q
    | |||||    
T  24074617 acctgac 24074623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 25689484 - 25689366
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttc 103  Q
    ||||||| ||| ||||||||||||||| |||||||||||||  | |||  |  || | ||| ||||||| |||||||| |||| |||||| || ||||      
T  25689484 cgtgagcatagctcagttggtaggacactgcattattatatgtaggggccgaggttcgaaccccggacaccctacttaatcaccttataaagtgaattct 25689385  T
Q  104 aaccactaggctatctgac 122  Q
    ||||||||||||| |||||    
T  25689384 aaccactaggctacctgac 25689366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8682377 - 8682498
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| | | ||||||||| || |||||||||| | ||| |||||||  |  |||||||| | |||||||| |||    
T  8682377 tcccgtgagcatagctcagttggtaggacaattctttattatatgcaggggttggagttcgaaccccggacagtccccttattcattatataaggtgaat 8682476  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  |  |||||||||| |||||    
T  8682477 tctagtcactaggctacctgac 8682498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 8740740 - 8740655
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||||||| |||| |||||||| || ||| ||  || | ||||||||||| ||||||||||||  ||||||||| ||||    
T  8740740 tcagttggtaggacaatgcagtattatatgcaggggctgaggttcgaactccggacaccctacttattcatcttataaggtgaatt 8740655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 10970266 - 10970355
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||| ||| ||||||||||||| | ||||||||||||| || ||| ||| || ||||| ||| ||| || |||||||||| |||||||    
T  10970266 gtgagcatagctcagttggtaggataatgcattattatatgcaggggctggggttcaaaccccgaacaccccacttattcaccttataag 10970355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 13762607 - 13762490
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttca 104  Q
    |||||| ||||||||||||||||||| ||||||||||||| || ||||  | || | |||  |||||| || |||||||||| ||| ||||| ||||  |    
T  13762607 gtgagcatagttcagttggtaggacaatgcattattatatgcaggggtcagtgttcgaaccacggacaccccacttattcaccttacaaggtaaattcta 13762508  T
Q  105 accactaggctatctgac 122  Q
    | || ||| |||||||||    
T  13762507 atcattagactatctgac 13762490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 17987548 - 17987427
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||| | ||| ||||||||||||| | ||||||||||||| || |||  ||||| | ||| ||||||| || | |||||||| ||||||||| |||    
T  17987548 tcccgtgaacatagctcagttggtaggataatgcattattatatgcaggggccggagttcgaaccccggacaccccaattattcaccttataaggtgaat 17987449  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||||| || |||||    
T  17987448 tatagccactaggatacctgac 17987427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 34073338 - 34073238
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||||||||||||||||| | |||||||||||||  | ||||    || | ||| ||||||| || |||||||||| ||||||||| |||    
T  34073338 tcccgtgagcgtagttcagttggtaggataatgcattattatatgtaggggtcaaggttcgaaccccggacaccccacttattcaccttataaggtgaat 34073239  T
Q  101 t 101  Q
    |    
T  34073238 t 34073238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 35301237 - 35301173
Alignment:
Q  26 ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    ||||| ||||||||||||| || |||| || || | ||||||||||| |||||||||||||||||    
T  35301237 ggacaatgcattattatatgcaggggtcggggttcgaactccggacaccctacttattcacttta 35301173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40329304 - 40329220
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattca 85  Q
    |||||||||| ||| || |||||||| ||| |||||||||||||| |  |||||||||   |||| ||||||||| |||||||||    
T  40329304 tcccgtgagcatagctcggttggtagaacaatgcattattatatatagcggttggagtttgaacttcggacatcccacttattca 40329220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 42688055 - 42688095
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  42688055 cgtgagcatagttcagttggtaggacaatgcattattatat 42688095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 42761962 - 42761862
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaattt 102  Q
    |||||||| ||  |||||||||| |||| ||||||||||||| || |||  || || | ||||| |||||  | |||||||||||||||||||| |||||    
T  42761962 ccgtgagcataactcagttggtatgacaatgcattattatatgcagggggcggggttcgaactctggacactccacttattcactttataaggtgaattt 42761863  T
Q  103 c 103  Q
    |    
T  42761862 c 42761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2376514 - 2376557
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||    
T  2376514 tcccgtgagcatagttcaattggtaggacaatgcattattatat 2376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23857423 - 23857380
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  23857423 tcccgtgagcatagctcagttggtaggacaatgcattattatat 23857380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28465614 - 28465657
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  28465614 tcccgtgagcatagctcagttggtaggacaatgcattattatat 28465657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29108658 - 29108701
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  29108658 tcccgtgagcatagctcagttggtaggacaatgcattattatat 29108701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31373316 - 31373359
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||    
T  31373316 tcccgtgagcatagctcagttggtaggacattacattattatat 31373359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41225764 - 41225721
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  41225764 tcccgtgagcatagctcagttggtaggacaatgcattattatat 41225721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 14012608 - 14012718
Alignment:
Q  2 cccgtgagcttagttcagttggta-ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    ||||||||| |||||||||||| | ||||| |||||| |||||| || |||  || || | || |||||||| || |||||||||| ||||||||| |||    
T  14012608 cccgtgagcatagttcagttggcagggacaatgcattgttatatgcaggggccggggttcgaagtccggacaccccacttattcacattataaggtgaat 14012707  T
Q  101 ttcaaccacta 111  Q
    || | ||||||    
T  14012708 tttagccacta 14012718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1033059 - 1032967
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||||||  ||| ||||||||| ||||| ||||||||||||| || |||| ||||| | ||| ||| ||| || |||||||||| |||||||    
T  1033059 tcccgtgagtctagctcagttggtgggacaatgcattattatatgcaggggtcggagttcgaac-ccgaacaccccacttattcaccttataag 1032967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4798640 - 4798519
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||  ||| ||||||||||||| | ||||||||||||| || |||  || || | ||| ||||||| || |||||||||| || |||||| |||    
T  4798640 tcccgtgagtatagctcagttggtaggataatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgtaaggtgaat 4798541  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||| ||| |||||    
T  4798540 tctagccactagactacctgac 4798519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 26703974 - 26703889
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||||||| ||||||||||||| ||||||| || || | ||  ||| ||| |  |||||||||| ||||||||| ||||    
T  26703974 tcagttggtaggacaatgcattattatatgcaagggtcggggttcgaatcccgaacacctcacttattcaccttataaggtgaatt 26703889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 3747932 - 3747860
Alignment:
Q  24 taggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggt 96  Q
    ||||||| |||||||||||||| | ||||||  || ||||  || |||| ||||||||||||| |||||||||    
T  3747932 taggacaatgcattattatatataggggttgtggttcaaatcccagacaccctacttattcaccttataaggt 3747860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 9578098 - 9578058
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||||||||||||| || ||| |||||||||||||    
T  9578098 cgtgagcttagttcagttggcagaacaatgcattattatat 9578058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25689546 - 25689502
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatata 45  Q
    |||||||||| ||| ||||||||| ||||| ||||||||||||||    
T  25689546 tcccgtgagcatagctcagttggttggacaatgcattattatata 25689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 43847701 - 43847741
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    ||||||| ||| ||||||||||||||| |||||||||||||    
T  43847701 cgtgagcatagctcagttggtaggacaatgcattattatat 43847741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 44361022 - 44360915
Alignment:
Q  12 tagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccacta 111  Q
    ||||||||||||||||||| |||   ||||||| || ||||||| || | ||| |||  ||||| |||||| ||| ||||||||| ||||  | ||||||    
T  44361022 tagttcagttggtaggacaatgc---attatatgcaggggttggggttcgaaccccgatcatcccacttatccaccttataaggtgaattctagccacta 44360926  T
Q  112 ggctatctgac 122  Q
    | |||||||||    
T  44360925 gactatctgac 44360915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34396079 - 34396200
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| || |||  ||||| | ||||||||||| |||| |||||||| ||||||||| |||    
T  34396079 tcccgtgagcatagttcagttggtacgacaatgcattattatatgcaggggccggagttcgaactccggacaccctatttattcaccttataaggtgaat 34396178  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  ||||| ||| ||| |||||    
T  34396179 tctaaccaatagactacctgac 34396200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12089093 - 12089214
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  ||||| | ||| ||||||| || |||||||||| ||||||||| |||    
T  12089093 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcaccttataaggtgaat 12089192  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||||| || |||||    
T  12089193 tctagccactaggatacctgac 12089214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 9438313 - 9438413
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| || ||||||| || | ||| ||||||| || ||| |||||| ||||||||| ||||  ||||||||||||    
T  9438313 tcagttggtaggacaatgcattattatatgcaggggttggggttcgaaccccggacaccccactcattcaccttataaggtgaattctaaccactaggct 9438412  T
Q  116 a 116  Q
    |    
T  9438413 a 9438413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 7563675 - 7563565
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| |||||||||| || || ||||  | || ||||| ||||||| || |||||||||| ||||||||| |||    
T  7563675 tcccgtgagcatagctcagttggtaggacaatgcattattacatgcaggggtcagggttcaaaccccggacaccccacttattcaccttataaggtgaat 7563576  T
Q  101 ttcaaccacta 111  Q
    || | ||||||    
T  7563575 tttagccacta 7563565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 15289051 - 15288954
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||| |||||||||||||||||||||||||||||||||  | ||| ||| || | |||||| |||| || |||||||||  ||||||||| ||||    
T  15289051 cgtgagcatagttcagttggtaggacattgcattattatatgtaggggctggggttcgaactccagacaccccacttattcatcttataaggtgaatt 15288954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21507300 - 21507207
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||||||| ||| | ||||||||||||| || |||||||||| || |||| |||||   ||||||||||| || ||||||||||||||||||    
T  21507300 tcccgtgagcatagcttagttggtaggacaatgtattattatatgcaggggtcggagtttgaactccggacaccccacttattcactttataag 21507207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30566054 - 30566175
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| ||  ||||| |||   ||| ||||||| || |||||||||| ||||||||| |||    
T  30566054 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagaggttgaagtttgaaccccggacaccccacttattcaccttataaggtgaat 30566153  T
Q  101 ttcaaccactaggctatctgac 122  Q
    | || ||||||| ||| |||||    
T  30566154 tccagccactagactacctgac 30566175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 12128005 - 12127887
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttc 103  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| || |||| ||| | | ||| |||||||  | |||||||||| ||||||||| ||||      
T  12128005 cgtgagcatagctcagttggtaggacaatgcattattatatgcaggggtcggaattcgaaccccggacacgccacttattcaccttataaggtgaattct 12127906  T
Q  104 aaccactaggctatctgac 122  Q
    | ||||||| ||| |||||    
T  12127905 agccactagactacctgac 12127887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9491834 - 9491713
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| |||||||||||||  | |||  || || | ||| ||||||| || |||||||||| ||||||| | |||    
T  9491834 tcccgtgagcataactcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccggacaccccacttattcaccttataagatgaat 9491735  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  ||||||||||||| |||||    
T  9491734 tctaaccactaggctaactgac 9491713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 22389849 - 22389749
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || ||||  | || | ||  ||||||| || |||||||||| ||||||||| |||    
T  22389849 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggtcagggttcgaatcccggacaccccacttattcaccttataaggtgaat 22389750  T
Q  101 t 101  Q
    |    
T  22389749 t 22389749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 35190759 - 35190859
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||| ||||| ||| ||||||||||| ||| ||||||||||||| || |||| ||||| | ||| ||| ||| || |||||||||| ||||||||| |||    
T  35190759 tcccatgagcatagctcagttggtagaacaatgcattattatatgcaggggtcggagttcgaaccccgaacaccccacttattcaccttataaggtgaat 35190858  T
Q  101 t 101  Q
    |    
T  35190859 t 35190859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 5288442 - 5288344
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||| ||  ||||||||||||||| ||||||||||||| || |||| || || | ||||||||||| |  | |||||||| ||||||||| ||||    
T  5288442 ccgtgagcataactcagttggtaggacaatgcattattatatgcaggggtcggggtccgaactccggacacctcaattattcaccttataaggtgaatt 5288344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 18904767 - 18904661
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| |||||||||||||  | |||  || || | ||||| ||||| || |||||||||| ||||||||| ||||  | ||||||||||    
T  18904767 tcagttggtaggacaatgcattattatatgtatgggccggggttcgaactctggacaccccacttattcaccttataaggtgaattctagccactaggct 18904668  T
Q  116 atctgac 122  Q
    | |||||    
T  18904667 acctgac 18904661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 26528580 - 26528674
Alignment:
Q  18 agttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactag 112  Q
    ||||||||| ||| ||||||||||||| || |||| || || |||||  |||||| || |||||||||| ||||||||| ||||| || ||||||    
T  26528580 agttggtagaacaatgcattattatatgcaggggtcggggttcaaacctcggacaccccacttattcaccttataaggtaaattttaaacactag 26528674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34365731 - 34365772
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattat 42  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  34365731 tcccgtgagcatagttcagttggtaggacaatgcattattat 34365772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 8233082 - 8233174
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    |||||||||| ||| ||||||||||||||| | ||||||||||||||  |||  | || | ||||||| ||| | ||||||||||| ||||||    
T  8233082 tcccgtgagcatagctcagttggtaggacaatacattattatatacagaggtcagggttcgaactccgaacaccttacttattcaccttataa 8233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 12101898 - 12101982
Alignment:
Q  17 cagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||||||||| | ||||||||||| || |||  || || | ||| ||||||| ||||||||||||| ||||||||| ||||    
T  12101898 cagttggtaggacaatacattattatatgcaggggccggcgttcgaaccccggacaccctacttattcaccttataaggtgaatt 12101982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 31741557 - 31741469
Alignment:
Q  6 tgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||| ||| ||||||||||||||| |||||||||||||  | || ||||||| | || | ||||||||| | |||||||| |||||||    
T  31741557 tgagcatagctcagttggtaggacaatgcattattatatgtagggattggagttcgaatttcggacatcccatttattcaccttataag 31741469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19642646 - 19642603
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  19642646 tcccgtgagcatagctcagttggtaggacaatgcattattatat 19642603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 858176 - 858139
Alignment:
Q  6 tgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  858176 tgagcttagttcagttggtaggacattg-attattatat 858139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 19165362 - 19165467
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| ||  |||||| || | ||| || |||| || |||||||||| ||||||||| ||||  | ||||||| ||    
T  19165362 tcagttggtaggacaatgcattattatatgcagaggttggggttcgaac-cccgacaccccacttattcaccttataaggtgaattctagccactagtct 19165460  T
Q  116 atctgac 122  Q
    | |||||    
T  19165461 acctgac 19165467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 23771048 - 23771129
Alignment:
Q  20 ttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||| ||||||||||||| || |||  || || | ||||||||||| || | ||||||||| |||||||| ||||    
T  23771048 ttggtaggacaatgcattattatatgcaggggaaggggttcgaactccggacaccccatttattcactctataaggtgaatt 23771129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 24470490 - 24470401
Alignment:
Q  2 cccgtgagcttagttcagttggtag-gacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    ||||| ||| ||| |||||||| || |||| |||||||||||||||| |||  ||||| | ||| ||||| |||| ||||||||||||||    
T  24470490 cccgtaagcatagctcagttggcagagacaatgcattattatatacaggggccggagttcgaaccccggaaatcccacttattcacttta 24470401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 6297003 - 6296923
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattca 85  Q
    |||||| ||| || |||| ||||||| ||||||||||||| ||| ||| ||| | | |||  |||||||||||||||||||    
T  6297003 gtgagcatagctcggttgataggacaatgcattattatatgcaatggtcggaattcgaacctcggacatcctacttattca 6296923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 6303813 - 6303733
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattca 85  Q
    |||||| ||| || |||| ||||||| ||||||||||||| ||| ||| ||| | | |||  |||||||||||||||||||    
T  6303813 gtgagcatagctcggttgataggacaatgcattattatatgcaatggtcggaattcgaacctcggacatcctacttattca 6303733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 24623533 - 24623569
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggt 52  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  24623533 tcagttggtaggacaatgcattattatatgcaagggt 24623569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 25020622 - 25020506
Alignment:
Q  6 tgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaa 105  Q
    ||||| ||| |||| |||||||||  ||||||||||||| || |||   | || | ||| ||||||| || |||||||||| ||||||||| ||||  |     
T  25020622 tgagcatagctcagctggtaggacgatgcattattatatgcaggggcctgggttcgaaccccggacaccccacttattcaccttataaggtgaattctag 25020523  T
Q  106 ccactaggctatctgac 122  Q
    ||||||||||| |||||    
T  25020522 ccactaggctacctgac 25020506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 29096403 - 29096286
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttca 104  Q
    |||||| ||| ||||||||||||||| ||||||||||||| ||||||  ||||| | ||| ||||||| || |||||||||| ||||||||| ||||  |    
T  29096403 gtgagcatagctcagttggtaggacaatgcattattatatgcaagggccggagttcgaaccccggacaccccacttattcaccttataaggtgaattcta 29096304  T
Q  105 accactaggctatctgac 122  Q
     ||||||||||| |||||    
T  29096303 gccactaggctacctgac 29096286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32158513 - 32158392
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||| || |||  || || | ||| ||| ||| || |||||||||| ||||||||| |||    
T  32158513 tcccgtgagcttagctcaattggtaggacaatgcattattatatgcaggggccggggttcgaaccccgaacaccccacttattcaccttataaggtgaat 32158414  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  32158413 tctagccactaggctacctgac 32158392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7645201 - 7645086
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| | ||||||||||||| ||||||||||||| ||  ||||||||| |||| |  ||||| |  |||||||||| ||||||||| |||    
T  7645201 tcccgtgagcatagcttagttggtaggacaatgcattattatatgcagaggttggagttcaaattttggacacctcacttattcaccttataaggtgaat 7645102  T
Q  101 ttcaaccactaggcta 116  Q
    || | |||| ||||||    
T  7645101 tttagccacaaggcta 7645086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 26169096 - 26169013
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||||||| ||||||||||||| || |||||||||| | ||| |||||||  | |||||||||| ||||||||| ||||    
T  26169096 tcagttggtaggacaatgcattattatatgcaggggttggagttcgaaccccggaca--cgacttattcaccttataaggtaaatt 26169013  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 30403761 - 30403867
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| | |||||||||||||| |||  |||||   ||| ||||||| || |||||||||| ||||||||| ||||  |||||||| |||    
T  30403761 tcagttggtaggacaatacattattatatacaggggccggagtttgaaccccggacaccccacttattcaccttataaggtgaattctaaccactaagct 30403860  T
Q  116 atctgac 122  Q
    | |||||    
T  30403861 acctgac 30403867  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 34010542 - 34010622
Alignment:
Q  12 tagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttata 92  Q
    ||||||||||||||||||| |||||||||||||| | |||| ||||| | ||| |||||||||  | |||||||| |||||    
T  34010542 tagttcagttggtaggacaatgcattattatatataggggtcggagttcgaaccccggacatctcatttattcaccttata 34010622  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 42455478 - 42455378
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| || |||  ||||| | ||| |||||||  | |||||||||| ||||||||| ||||  | ||||||||||    
T  42455478 tcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacactccacttattcaccttataaggtgaattctagccactaggct 42455379  T
Q  116 a 116  Q
    |    
T  42455378 a 42455378  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 27219662 - 27219547
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| | ||||||||||||| ||||||||||||| || |||  || || ||||| ||| ||| || |||||||||| | ||||||| |||    
T  27219662 tcccgtgagcatagcttagttggtaggacaatgcattattatatgcatgggccggggttcaaaccccgtacaccccacttattcacctaataaggtgaat 27219563  T
Q  101 ttcaaccactaggcta 116  Q
    |  | |||||||||||    
T  27219562 tctagccactaggcta 27219547  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 29144142 - 29144249
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttca 104  Q
    |||||||||  ||||||||||||||| ||||||||||||| || |||| || ||   |||||| |||| || | |||||||| ||||||||| ||||  |    
T  29144142 gtgagcttaactcagttggtaggacaatgcattattatatgcaggggtcggggtttgaactccagacaccccatttattcacgttataaggtgaattcta 29144241  T
Q  105 accactag 112  Q
    ||||||||    
T  29144242 accactag 29144249  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 14487571 - 14487657
Alignment:
Q  15 ttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||||||||||| |||||||||||||  | ||||||| || | |||  |||| |||| |||||||||| ||||||||| ||||    
T  14487571 ttcagttggtaggacaatgcattattatatgtaggggttggggttcgaacctcggatatcccacttattcaccttataaggtgaatt 14487657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18872517 - 18872636
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||| || || | ||| ||| ||| || |||||||||| |  |||||| |||    
T  18872517 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccgaacaccccacttattcacct--taaggtgaat 18872614  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  18872615 tctagccactaggctacctgac 18872636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 26302590 - 26302485
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaattt 102  Q
    |||||||| ||| || |||||||||||| ||||||||||||||| ||||  ||||| | |||  |||||| || |||||||||  ||||||||| |||||    
T  26302590 ccgtgagcatagctcggttggtaggacaatgcattattatatac-agggccggagttcgaacctcggacaccccacttattcatcttataaggtgaattt 26302492  T
Q  103 caaccac 109  Q
     ||||||    
T  26302491 taaccac 26302485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 2029227 - 2029106
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  | ||||||||||||| || |||||||||| || |||| ||  | | ||| ||| ||| || |||||||||| ||||||||| |||    
T  2029227 tcccgtgagcataacttagttggtaggacaatgtattattatatgcaggggtcgggattcgaaccccgaacaccccacttattcaccttataaggtgaat 2029128  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||||||||||||||    
T  2029127 tctagccactaggctatctgac 2029106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19059103 - 19058982
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| |||||||| |||| || |||  || || | ||| | ||||| || |||||||||| ||||||||| |||    
T  19059103 tcccgtgagcatagctcagttggtaggacaatgcattatcatatgcaggggccggggttcgaaccctggacaccccacttattcaccttataaggtgaat 19059004  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||| ||| |||||    
T  19059003 tctagccactagcctacctgac 19058982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 20762292 - 20762377
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||| ||| |||||||||||||| || |||||| || | ||| | ||||| || |||||||||| ||||||||| ||||    
T  20762292 tcagttggtagaacaatgcattattatatataacggttggggttcgaaccctggacaccccacttattcaccttataaggtgaatt 20762377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 6561909 - 6562009
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||| | ||||||||| ||| || || | ||||| | ||||||| ||| || || ||||||| ||||||||| ||||  ||||||||||||    
T  6561909 tcagttggtaggataatgcattattttatgcagggatcggagttcgaactccgaacaccccacatattcaccttataaggtgaattctaaccactaggct 6562008  T
Q  116 a 116  Q
    |    
T  6562009 a 6562009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 20945990 - 20945890
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||| ||||||||||| ||||||||||||| || |||  || || | || |||||||| || |||||||||| ||||||||| |||    
T  20945990 tcccgtgagcataactcaattggtaggacaatgcattattatatgcaggggccggggttcgaaatccggacaccccacttattcaccttataaggtgaat 20945891  T
Q  101 t 101  Q
    |    
T  20945890 t 20945890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 29841347 - 29841394
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaaggg 51  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| ||||||    
T  29841347 cgtgagcatagctcagttggtaggacaatgcattattatatgcaaggg 29841394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33800889 - 33800984
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggt 96  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || |||  || || | ||| || |||| || |||||||||| |||||||||    
T  33800889 tcccgtgagcataactcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcaccttataaggt 33800984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 18478002 - 18478120
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttc 103  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| |  |||  || || | ||| | ||||| || |||||||||| ||||||||| ||||      
T  18478002 cgtgagcatagctcagttggtaggacaatgcattattatatgctggggccggggttcgaaccctggacaccccacttattcaccttataaggtgaattct 18478101  T
Q  104 aaccactaggctatctgac 122  Q
    | ||| ||||||| |||||    
T  18478102 agccattaggctacctgac 18478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 30394569 - 30394606
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattat 42  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  30394569 gtgagcttagctcagttggtaggacaatgcattattat 30394606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 22863777 - 22863813
Alignment:
Q  13 agttcagttggtaggacattgcattattatatacaag 49  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  22863777 agttcagttggtaggacaatgcattattatatgcaag 22863813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35113033 - 35112962
Alignment:
Q  1 tcccgtgagcttagttcagttggta-ggacattgcattattatatacaagggttggagtacaaactccggaca 72  Q
    |||||||||||||||||||||| || ||| |||||| |||||||| || ||||||| || | |||||||||||    
T  35113033 tcccgtgagcttagttcagttgatagggatattgca-tattatatgcaggggttggggttcgaactccggaca 35112962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39760070 - 39760162
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    ||||||||| ||| ||  |||||||||||| || |||||||||| || ||||||||||   ||| ||| |||||| | |||||||| ||||||    
T  39760070 tcccgtgagtttaatttggttggtaggacaatgtattattatatgcaggggttggagtttgaaccccgaacatcccatttattcaccttataa 39760162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 33206753 - 33206874
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || ||| ||| || | ||| ||||||| || |||||||||| ||||||||| |||    
T  33206753 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcaccttataaggtgaat 33206852  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  33206853 tctagccactaggctacctgac 33206874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49146080 - 49146180
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||||||  ||||||||||||||| ||||||||||||| || |||| || || | ||| ||||||| || |||||||||||||||||||| |||    
T  49146080 tcccgtgagcttaactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttataaggtgaat 49146179  T
Q  101 t 101  Q
    |    
T  49146180 t 49146180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 32876200 - 32876100
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| || |||| | ||| |||||  ||||||||||| |||||||| ||||||||| ||||  |||||||| |||    
T  32876200 tcagttggtaggacaatgcattattatatgcaggggtcgaagttcaaacctcggacatcctatttattcacattataaggtgaattctaaccactaagct 32876101  T
Q  116 a 116  Q
    |    
T  32876100 a 32876100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42271112 - 42271012
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| |||||| |||||| || |||  || || | ||||||||||| ||||||||||||| ||||||||| |||    
T  42271112 tcccgtgagcatagctcagttggtaggacaatgcattgttatatgcaggggccggggttcgaactccggacaccctacttattcaccttataaggtgaat 42271013  T
Q  101 t 101  Q
    |    
T  42271012 t 42271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 14417864 - 14417985
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||| ||||| ||| ||| ||||||||||| ||||||||||||| || ||| |||||| | ||| ||||||| || |||||||||| ||||||||| |||    
T  14417864 tcccatgagcatagctcaattggtaggacaatgcattattatatgcaggggctggagttcgaaccccggacaccccacttattcaccttataaggtgaat 14417963  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||| |||| |||||    
T  14417964 tctagccactaagctacctgac 14417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 16278050 - 16277957
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||||||| ||| ||||||||||||||  ||||||||||||| || |||| ||  | | |||||||||||||| |||||||||| |||||||    
T  16278050 tcccgtgagcatagctcagttggtaggaccatgcattattatatgcaggggtcgggattcgaactccggacatcccacttattcaccttataag 16277957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 45713476 - 45713597
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  | ||||||||||||| |||||||||||||  | |||  ||||| | ||||||||||| || |||||||||| ||||||||| |||    
T  45713476 tcccgtgagcataacttagttggtaggacaatgcattattatatgtaggggccggagttcgaactccggacaccccacttattcaccttataaggtgaat 45713575  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  ||| ||||||||| |||||    
T  45713576 tctaactactaggctacctgac 45713597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 362965 - 363060
Alignment:
Q  27 gacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggctatctgac 122  Q
    |||| ||||||||||||| || |||| ||||| | ||| ||||| | || |||||||||||||||||||| ||||  || ||||||||||||||||    
T  362965 gacaatgcattattatatgcaggggtcggagttcgaaccccggataccccacttattcactttataaggtgaattctaatcactaggctatctgac 363060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 48173284 - 48173382
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||| ||| |||||||||| |||| |||||||||||||  | |||||||||| | ||| ||||||| |  |||||||||| ||||||||| ||||    
T  48173284 ccgtgagcatagctcagttggtaagacaatgcattattatatgtatgggttggagttcgaaccccggacacctcacttattcaccttataaggtgaatt 48173382  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 17440064 - 17439943
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| || |||||||||||| ||||||||||||| || |||  || ||   |||  |||| | || |||||||||| ||||||||| |||    
T  17440064 tcccgtgagcatagctcggttggtaggacaatgcattattatatgcaggggccggtgtttgaacctcggataccccacttattcaccttataaggtgaat 17439965  T
Q  101 ttcaaccactaggctatctgac 122  Q
    || ||||||||||||| |||||    
T  17439964 tttaaccactaggctacctgac 17439943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32665277 - 32665362
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcac 86  Q
    |||||| ||| ||| |||||| |||||| | ||||||||||||| ||||||| || || ||||||||||||| || ||||||||||    
T  32665277 tcccgttagcatagctcagttagtaggataatgcattattatatgcaagggtcggggttcaaactccggacaccccacttattcac 32665362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 43566895 - 43566774
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||| | ||| ||||||||||||||| ||||||||||||| || |||| || || | |||  | |||| || |||||||||| ||||||||| |||    
T  43566895 tcccgtgaacatagctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctcagacaccccacttattcaccttataaggtgaat 43566796  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  43566795 tctagccactaggctacctgac 43566774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13540063 - 13539963
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||  ||| ||||||||||||||| |||||||||||||  | ||||||| || | ||| ||||||| || ||||||| || ||||||||| |||    
T  13540063 tcccgtgagtatagctcagttggtaggacaatgcattattatatgtaggggttggggttcgaaccccggacaccccacttatttaccttataaggtgaat 13539964  T
Q  101 t 101  Q
    |    
T  13539963 t 13539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 35483265 - 35483365
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| |||||| |||||||| ||||||||||||| || |||| || || | ||  ||||||| || |||||||||| ||||||||| |||    
T  35483265 tcccgtgagcatagctcagttagtaggacaatgcattattatatgcaggggtcggggttcgaatcccggacaccccacttattcaccttataaggtaaat 35483364  T
Q  101 t 101  Q
    |    
T  35483365 t 35483365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 40786279 - 40786391
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttc 103  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| || |||| || || | |||  | |||  || |||||||| ||||||||||| ||||      
T  40786279 cgtgagcatagctcagttggtaggacaatgcattattatatgcatgggtcggggttcgaacctcagacgccccacttattctctttataaggtgaattct 40786378  T
Q  104 aaccactaggcta 116  Q
    |||||||||||||    
T  40786379 aaccactaggcta 40786391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50720418 - 50720461
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  50720418 tcccgtgagcatagttcagttggtaggacaatgcattattatat 50720461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50792430 - 50792387
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  50792430 tcccgtgagcatagttcagttggtaggacaatgcattattatat 50792387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 47191369 - 47191490
Alignment:
Q  2 cccgtgagcttagttcagttggtagg-acattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    ||||||||| ||| |||||||| ||| ||| ||||||||||||| || ||| |||||| | ||| ||| ||| || |||||||||| ||||||| | |||    
T  47191369 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggagttcgaaccccgaacaccccacttattcaccttataagatgaat 47191468  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  47191469 tctagccactaggctacctgac 47191490  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 50724364 - 50724484
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||| ||||| ||||||||||||| || ||||||| || | |||  |||||| || |||||||||| ||| || || |||    
T  50724364 tcccgtgagcatagctcagttggt-ggacaatgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcaccttaaaaagtgaat 50724462  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  50724463 tctagccactaggctacctgac 50724484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 50788484 - 50788364
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||| ||||| ||||||||||||| || ||||||| || | |||  |||||| || |||||||||| ||| || || |||    
T  50788484 tcccgtgagcatagctcagttggt-ggacaatgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcaccttaaaaagtgaat 50788386  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  50788385 tctagccactaggctacctgac 50788364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 16006605 - 16006486
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||| ||| |||||||| |||| |||| || || || | ||| || |||| || |||||||||| ||||||||| |||    
T  16006605 tcccgtgagcataactcagttggtagaacaatgcattataatatgcaagagtcggggttcgaaccccagacaccccacttattcaccttataaggtgaat 16006506  T
Q  101 ttcaaccactaggctatctg 120  Q
    |  ||||||||  |||||||    
T  16006505 tctaaccactaaactatctg 16006486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21420288 - 21420245
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||    
T  21420288 tcccgtgagtttagctcagttggtaggacaatgcattattatat 21420245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 35477752 - 35477827
Alignment:
Q  26 ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||||||||||||||  | | || ||||| | ||||||||||| || |||||||||| ||||||||| ||||    
T  35477752 ggacattgcattattatatttaggtgtcggagttcgaactccggacaccccacttattcaccttataaggtgaatt 35477827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 38682352 - 38682237
Alignment:
Q  6 tgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaa 105  Q
    ||||| ||||||| ||||||||||| | ||||||||||| || |||| ||  | | ||  ||||||| ||| ||||||||  ||||||||| ||||  ||    
T  38682352 tgagcatagttcatttggtaggacaatacattattatatgcaggggtcgggattcgaatcccggacaccctccttattcatcttataaggtgaattctaa 38682253  T
Q  106 ccactaggctatctga 121  Q
    |||||| |||||||||    
T  38682252 ccactaagctatctga 38682237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49639024 - 49639067
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  49639024 tcccgtgagcatagctcagttggtaggacaatgcattattatat 49639067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 335127 - 335029
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||| ||| | ||||||||||||| |||||||||||||  ||||   ||||| | ||| | ||||| || |||||||||| ||||||||| ||||    
T  335127 ccgtgagcatagcttagttggtaggacaatgcattattatatgtaaggaccggagttcgaaccctggacaccccacttattcaccttataaggtgaatt 335029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 29507215 - 29507297
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattca 85  Q
    |||||||||||  ||||||||||||||| ||||||||||||| || | ||||  || | |||||| ||||| | |||||||||    
T  29507215 ccgtgagcttaactcagttggtaggacaatgcattattatatgcaggagttgtggttcgaactccagacattccacttattca 29507297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 23820640 - 23820725
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||||||| ||||||||||||| || |||  ||||| | ||| || |||| || |||||||||  ||||||||| ||||    
T  23820640 tcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccagacaccccacttattcatcttataaggtgaatt 23820725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 28206569 - 28206516
Alignment:
Q  68 ggacatcctacttattcactttataaggtcaatttcaaccactaggctatctga 121  Q
    |||||||| |||||||||| ||||||||| ||||  ||||||||||||| ||||    
T  28206569 ggacatcccacttattcaccttataaggtgaattctaaccactaggctacctga 28206516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 39492833 - 39492938
Alignment:
Q  17 cagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggcta 116  Q
    |||||| ||||||| ||||||||||||| || ||| ||| || | ||| || |||| || ||||||| || ||||||||| ||||  |||||||| ||||    
T  39492833 cagttgttaggacaatgcattattatatgcatgggctggggttcgaaccccagacaccccacttatttacgttataaggtgaattctaaccactaagcta 39492932  T
Q  117 tctgac 122  Q
     |||||    
T  39492933 cctgac 39492938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 41121882 - 41121963
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctac-ttattcactttataaggt 96  Q
    ||||||||||||||| ||||||||||||| ||  ||| || || ||||| ||||||| || || |||||||| |||||||||    
T  41121882 tcagttggtaggacaatgcattattatatgcagaggtcggggttcaaaccccggacaccccactttattcaccttataaggt 41121963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 42824084 - 42823995
Alignment:
Q  2 cccgtgagcttagttcagttggtagg-acattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    ||||||||| ||  |||||||| ||| ||| | |||||||||||||||||||||| || | ||   |||||| |||||||||||||||||    
T  42824084 cccgtgagcataactcagttggcaggcacaatacattattatatacaagggttggggttcgaatctcggacaccctacttattcacttta 42823995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 48558751 - 48558800
Alignment:
Q  70 acatcctacttattcactttataaggtcaatttcaaccactaggctatct 119  Q
    |||||| |||||||||||||||||||| ||||  | ||||||||||||||    
T  48558751 acatcccacttattcactttataaggtgaattatagccactaggctatct 48558800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 48821036 - 48821081
Alignment:
Q  77 acttattcactttataaggtcaatttcaaccactaggctatctgac 122  Q
    |||||||||| ||||||||| ||||| ||||||||||||| |||||    
T  48821036 acttattcaccttataaggtgaattttaaccactaggctacctgac 48821081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13874932 - 13874833
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||| | ||| ||||||||| ||||| ||||||||||||| || |||| || || ||||  || ||||||| | |||||||| ||||||||| |||    
T  13874932 tcccgtgaacatagctcagttggt-ggacaatgcattattatatgcaggggtcggggttcaaatcccagacatcccatttattcaccttataaggtgaat 13874834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 17269402 - 17269374
Alignment:
Q  16 tcagttggtaggacattgcattattatat 44  Q
    |||||||||||||||||||||||||||||    
T  17269402 tcagttggtaggacattgcattattatat 17269374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32508893 - 32508793
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||| ||||| | ||||||||||||| || |||| || || | ||| ||| ||| || |||||||||| ||||||||| |||    
T  32508893 tcccgtgagcctaactcagttgataggataatgcattattatatgcaggggtcggggttcgaaccccgaacaccccacttattcaccttataaggtgaat 32508794  T
Q  101 t 101  Q
    |    
T  32508793 t 32508793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 34503214 - 34503254
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    ||||||| ||| ||||||||||||||| |||||||||||||    
T  34503214 cgtgagcatagctcagttggtaggacaatgcattattatat 34503254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 47062150 - 47062071
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggt 96  Q
    ||||||||||||||| |||||||||||||  | |||| ||||| | ||| ||||||| || | ||||| ||||||||||||    
T  47062150 tcagttggtaggacaatgcattattatat-gatgggtcggagttcgaaccccggacaccccatttattaactttataaggt 47062071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 53467956 - 53467988
Alignment:
Q  12 tagttcagttggtaggacattgcattattatat 44  Q
    ||||||||||||||||||| |||||||||||||    
T  53467956 tagttcagttggtaggacaatgcattattatat 53467988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54983808 - 54983764
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatata 45  Q
    |||||||||| ||| ||||||||||||| | ||||||||||||||    
T  54983808 tcccgtgagcatagctcagttggtaggataatgcattattatata 54983764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17115643 - 17115543
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| || |||||||||| ||| ||| ||||| | ||| |||||||||| | |||||||||||||||||| |||    
T  17115643 tcccgtgagcatagctcagttggtaggacactgtattattatatgcaaaggtcggagttcgaaccccggacatcccatttattcactttataaggtgaat 17115544  T
Q  101 t 101  Q
    |    
T  17115543 t 17115543  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 44422122 - 44422224
Alignment:
Q  20 ttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggctatct 119  Q
    ||||||||||| ||||||||||||| || || | ||||| | ||| ||||||| || |||||||||||||||||||| ||||  ||||||||||||| ||    
T  44422122 ttggtaggacaatgcattattatatgcagggatcggagttcgaaccccggacaccccacttattcactttataaggtaaattctaaccactaggctacct 44422221  T
Q  120 gac 122  Q
    |||    
T  44422222 gac 44422224  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 16028192 - 16028086
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| ||  ||| || || | |||||| ||||||| |||||||||||||||||||| ||||  | |||| || ||    
T  16028192 tcagttggtaggacaatgcattattatatgcagtggtcggggttcgaactccagacatcccacttattcactttataaggtgaattctagccaccagact 16028093  T
Q  116 atctgac 122  Q
    |||||||    
T  16028092 atctgac 16028086  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 580882 - 580761
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | ||| ||||||| || |||||||||| ||||||| | |||    
T  580882 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataagatgaat 580783  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  580782 tctagccactaggctacctgac 580761  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1836584 - 1836705
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||  | |  | || || | ||| ||||||| |||||||||||||  |||||||| |||    
T  1836584 tcccgtgagcctagctcagttggtaggacaatgcattattatatgaaggaatcggggttcgaaccccggacaccctacttattcaccatataaggtgaat 1836683  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||||||||||||||    
T  1836684 tctagccactaggctatctgac 1836705  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38530294 - 38530208
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaaggg-ttggagtacaaactccggacatcctacttattcac 86  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||| ||| |||| || | |||| |||||| || ||||||||||    
T  38530294 tcccgtaagcttagctcagttggtaggacaatgcattattatatacaggggcttggggttcgaactgcggacaccccacttattcac 38530208  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22538535 - 22538656
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || ||||||| || | ||  ||| ||| |  |||||||||| ||||||||| |||    
T  22538535 tcccgtgagcctaactcagttggtaggacaatgcattattatatgcaggggttggggttcgaatcccgaacacctcacttattcaccttataaggtgaat 22538634  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  22538635 tctagccactaggctacctgac 22538656  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27495534 - 27495626
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    |||||| ||| || |||||||||||||||| ||||||||||||| || ||||||   | | ||| ||| |||||||||||||| |||||||||    
T  27495534 tcccgtaagcataattcagttggtaggacaatgcattattatatgcaggggttgagattcgaaccccgaacatcctacttatttactttataa 27495626  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8234891 - 8234776
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| | |||||||||||  | |||  || || | ||| ||||||| || |||||||||| ||||||||| |||    
T  8234891 tcccgtgagcatagctcagttggtaggacaatacattattatatgtaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaat 8234792  T
Q  101 ttcaaccactaggcta 116  Q
    |  | |||||||||||    
T  8234791 tctagccactaggcta 8234776  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 19905735 - 19905633
Alignment:
Q  20 ttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggctatct 119  Q
    ||||| ||||| |||||||||||||||| |||| || || | ||| ||||||| || |||||||||| ||||||||| ||||  | ||| ||||||| ||    
T  19905735 ttggttggacaatgcattattatatacaggggtcggggttcgaaccccggacacccgacttattcaccttataaggtgaattctagccattaggctacct 19905636  T
Q  120 gac 122  Q
    |||    
T  19905635 gac 19905633  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 11133072 - 11133193
Alignment:
Q  2 cccgtgagcttagttcagttggta-ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    ||||||||| ||| |||||||||| ||||| |||||| |||||| || |||| || || | ||| ||||||| || |||||||||| ||||||||| |||    
T  11133072 cccgtgagcatagctcagttggtagggacaatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttataaggtgaat 11133171  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||||| || |||||    
T  11133172 tctagccactaggttacctgac 11133193  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17154645 - 17154766
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  || |||||||||||| ||||||||||||| || |||  || || | ||| ||||||| || |||||||||| ||||||||| | |    
T  17154645 tcccgtgagcataactcggttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgagt 17154744  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | ||||||||||| |||||    
T  17154745 tctagccactaggctacctgac 17154766  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 34620517 - 34620614
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||| ||| || |||||||||||| ||||||||||||| |||||||||| ||   ||| || ||||  ||| |||||||| ||||||||| ||||    
T  34620517 cgtgagcatagctcggttggtaggacaatgcattattatatgcaagggttggggtttgaaccccagacactctatttattcaccttataaggtgaatt 34620614  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 36520879 - 36520794
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcac 86  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||  | |||| || || | ||| ||||||| || ||||||||||    
T  36520879 tcccgtgagcgtagctcagttggtaggacaatgcattattatatgtaggggtcggggttcgaaccccggacaccccacttattcac 36520794  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 9791991 - 9791951
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  9791991 cgtgagcatagttcagttggtaggacaatgcattattatat 9791951  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 10262735 - 10262827
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || |||| || || | ||| || |||| || |||||||||| ||||||    
T  10262735 tcccgtgagcataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcaccttataa 10262827  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 20122574 - 20122454
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||  | |||  || || | ||| |||||||  | |||||||||  ||||||||| |||    
T  20122574 tcccgtgagcatagctcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccggacacgccacttattcatcttataaggtgaat 20122475  T
Q  101 ttcaaccactaggctatctga 121  Q
    |  | ||||||||||| ||||    
T  20122474 tctagccactaggctacctga 20122454  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30474294 - 30474194
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  |  || | ||| || |||| || |||||||||| ||||||||| |||    
T  30474294 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccgaggttcgaaccccagacaccccacttattcaccttataaggtgaat 30474195  T
Q  101 t 101  Q
    |    
T  30474194 t 30474194  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 36426951 - 36426855
Alignment:
Q  5 gtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||| ||| ||| ||||||||||| |||||||||||||  | ||||||| || | ||||||| ||| || |||||||||  ||||||||| ||||    
T  36426951 gtgagcatagctcacttggtaggacaatgcattattatatgtaggggttggggttcgaactccgaacaccccacttattcatcttataaggtgaatt 36426855  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 31956877 - 31956984
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggaca-tcctacttattcactttataaggtcaatttcaaccactaggc 114  Q
    ||||||||||||||| |||||||||||||  | ||| ||| || | ||||||| |||  || |||||||||| ||||||||| ||||  |||||| ||||    
T  31956877 tcagttggtaggacaatgcattattatatgtaggggctggggttcgaactccgaacacccccacttattcacgttataaggtgaattctaaccaccaggc 31956976  T
Q  115 tatctgac 122  Q
    || |||||    
T  31956977 tacctgac 31956984  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 36481067 - 36481122
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagt 58  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| || ||| ||||||    
T  36481067 ccgtgagcatagctcagttggtaggacaatgcattattatatgcatgggctggagt 36481122  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 18386892 - 18386818
Alignment:
Q  20 ttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||||||||| |||||||||||||  | ||| ||| || | ||||||||||| || |||||||||| |||||||    
T  18386892 ttggtaggacaatgcattattatatgtaggggctggggttcgaactccggacaccccacttattcaccttataag 18386818  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 32891292 - 32891398
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| || |||| ||  | | ||| ||||||| || |||||||||  ||||||| | ||||  | ||||||||||    
T  32891292 tcagttggtaggacaatgcattattatatgcaggggtcggttttcgaaccccggacaccccacttattcatcttataagatgaattctagccactaggct 32891391  T
Q  116 atctgac 122  Q
    | |||||    
T  32891392 acctgac 32891398  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 32943350 - 32943456
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||||||| ||||||||||||| ||  || ||| || | || | |||||| || |||||||||| |||||| || ||||| | ||||||| ||    
T  32943350 tcagttggtaggacaatgcattattatatgcagaggctggggttcgaatttcggacaccccacttattcaccttataaagtaaattttagccactagact 32943449  T
Q  116 atctgac 122  Q
    | |||||    
T  32943450 acctgac 32943456  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 44721788 - 44721682
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||||||| ||| ||||||||||||| || |||| || || | |||  |||||| || | |||||||| ||||||||| ||||  | |||||||| |    
T  44721788 tcagttggtagaacaatgcattattatatgcaggggtcggggttcgaacctcggacaccccatttattcaccttataaggtgaattctagccactaggtt 44721689  T
Q  116 atctgac 122  Q
    |||||||    
T  44721688 atctgac 44721682  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 18007256 - 18007337
Alignment:
Q  12 tagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    ||||||||||||||||||| || ||||||||||  || |||||| || ||||| ||  ||| || ||||||||| |||||||    
T  18007256 tagttcagttggtaggacaatgtattattatatgtaaaggttggggttcaaaccccatacaccccacttattcattttataa 18007337  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 22297548 - 22297459
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | ||| ||||||| || | |||||||| ||||||    
T  22297548 cgtgagcatagctcagttggtaggacaatgcattattatatgcaggggcaggggttcgaaccccggacaccccatttattcaccttataa 22297459  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 35502156 - 35502091
Alignment:
Q  17 cagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttat 82  Q
    |||||||||||||| |||||||||||||| | |||| |||||   ||||||||||| || ||||||    
T  35502156 cagttggtaggacaatgcattattatatataggggtcggagtttgaactccggacaccccacttat 35502091  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 39334949 - 39334892
Alignment:
Q  32 tgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttt 89  Q
    |||||||||||||||| ||| ||| || | |||||| ||||||| |||||||||||||    
T  39334949 tgcattattatatacaggggctggggttcgaactccagacatcccacttattcacttt 39334892  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2114534 - 2114434
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||| ||| |||||||||||||  | |||| || || | ||| ||||||| |  | |||||||| ||||||||| |||    
T  2114534 tcccgtgagcatagctcagttggtagaacaatgcattattatatgtaggggtcggggttcgaaccccggacacctcatttattcaccttataaggtgaat 2114435  T
Q  101 t 101  Q
    |    
T  2114434 t 2114434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 27016278 - 27016333
Alignment:
Q  3 ccgtgagcttagttcagttggta-ggacattgcattattatatacaagggttggagt 58  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||| |||| |||||    
T  27016278 ccgtgagcttagttcagttggtatggatattgca-tattatatacaggggtcggagt 27016333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31564091 - 31564143
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggtt 53  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || |||||    
T  31564091 tcccgtgagcataactcagttggtaggacaatgcattattatatgcaggggtt 31564143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 47552212 - 47552330
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttc 103  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| ||||||  || || | ||| ||||||| ||||||||||||| ||||||||| ||||      
T  47552212 cgtgagcatagctcagttggtaggacaatgcattattatatgcaagggccggggttcgaaccccggacaccctacttattcaccttataaggtgaattct 47552311  T
Q  104 aaccactaggctatctgac 122  Q
    | |||| |||||| |||||    
T  47552312 agccaccaggctacctgac 47552330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 21925471 - 21925592
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||| ||||||||||| ||||||||||||||||  ||| || ||   |||| |||| |||| |||||||||| ||||||| | |||    
T  21925471 tcccgtgagcatagctcaattggtaggacaatgcattattatatacataggtcggggtttgaacttcggatatcccacttattcaccttataagatgaat 21925570  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  | |||||||||||||||||    
T  21925571 tctagccactaggctatctgac 21925592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 30152740 - 30152830
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||||||||| ||||||||||||||| |||||||||||||| | |||| || || | ||| ||| ||| || |||||||||| |||||||    
T  30152740 cgtgagcttagctcagttggtaggacaatgcattattatatataggggtcggggttcgaaccccgaacaccccacttattcaccttataag 30152830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 35368407 - 35368513
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    |||||||||||||||||||||||||||||  | ||| ||  || | ||||||||||| || | |||||||| ||||||||| ||||  | ||||| ||||    
T  35368407 tcagttggtaggacattgcattattatatttaggggctgtggttcgaactccggacaccccatttattcaccttataaggtgaattctagccactgggct 35368506  T
Q  116 atctgac 122  Q
    |||||||    
T  35368507 atctgac 35368513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 22706127 - 22706034
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||||| | ||| ||||||||||||||| || |||||||||| || ||| ||  || ||||||||||||| || |||||||||| |||||||    
T  22706127 tcccgtgaacatagctcagttggtaggacaatgtattattatatgcaggggctgaggttcaaactccggacaccccacttattcaccttataag 22706034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 38792222 - 38792322
Alignment:
Q  15 ttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggc 114  Q
    ||||||||||| |||| ||||||||||||| || ||||  ||||   ||| ||||||| ||||||||||||| ||||||||| ||||  | |||||||||    
T  38792222 ttcagttggtaagacaatgcattattatatgcaggggtcagagtttgaaccccggacaccctacttattcaccttataaggtgaattctagccactaggc 38792321  T
Q  115 t 115  Q
    |    
T  38792322 t 38792322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 24396956 - 24397062
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttc-aaccactaggc 114  Q
    |||||||| |||||| ||||||||||||| || |||| ||||| | ||| | ||||| ||||||||||||||||| || || |||||| | |||||||||    
T  24396956 tcagttggcaggacaatgcattattatatgcaggggtcggagttcgaaccctggacaccctacttattcacttta-aaagtgaatttctagccactaggc 24397054  T
Q  115 tatctgac 122  Q
    || |||||    
T  24397055 tacctgac 24397062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 21086115 - 21086193
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||||||||||||| ||||||||||||| || || | | ||| | ||||||||||| || |||||||||| |||||||    
T  21086115 tcagttggtaggacaatgcattattatatgcagggatcgaagttcgaactccggacacccaacttattcaccttataag 21086193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49012394 - 49012479
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcac 86  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||  | ||||  | || |||| ||| |||| |||||||||||||    
T  49012394 tcccgtgagcatagctcagttggtaggacaatgcattattatatgaaggggtcagggttcaaattccagacaccctacttattcac 49012479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7263097 - 7262997
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||  ||| ||||||||||||||| |||||||||||||  |  ||||||||| | ||| ||| ||| |||| |||||||  ||||||||| |||    
T  7263097 tcccgtgagtatagctcagttggtaggacaatgcattattatatgtagaggttggagttcgaaccccgaacaccctatttattcatcttataaggtgaat 7262998  T
Q  101 t 101  Q
    |    
T  7262997 t 7262997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 30644165 - 30644265
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||  ||| ||||||||||||||| ||||||||||||| || |||  || || | ||| || |||| || |||||||||| ||||||||| |||    
T  30644165 tcccgtgagtatagctcagttggtaggacaatgcattattatatgcaggggccggtgttcgaaccccagacaccccacttattcaccttataaggtgaat 30644264  T
Q  101 t 101  Q
    |    
T  30644265 t 30644265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8195911 - 8195954
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  8195911 tcccgtgagcatagctcagttggtaggacaatgcattattatat 8195954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38778778 - 38778683
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggt 96  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || |||  |  || | ||| |||||||||| ||||||| || |||||||||    
T  38778778 tcccgtgagcatatctcagttggtaggacaatgcattattatatgcaggggccgaggttctaaccccggacatcccacttatttaccttataaggt 38778683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46337967 - 46337924
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||| | ||||||||||||||||||| |||||||||||||    
T  46337967 tcccgtgaacatagttcagttggtaggacaatgcattattatat 46337924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 2261581 - 2261483
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||| ||| ||| ||||||||||| ||||||||||||| || |||  || || | ||  ||||||| || |||||||||| ||||||||| ||||    
T  2261581 ccgtgagcatagctcaattggtaggacaatgcattattatatgcaggggccggggttcgaatcccggacacccaacttattcaccttataaggtgaatt 2261483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 2366368 - 2366474
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggct 115  Q
    ||||||| ||||||| ||||||||||||| || |||| || || | |||||  |||| || |||||||||| ||||||||| ||||  | ||| ||||||    
T  2366368 tcagttgataggacaatgcattattatatgcaggggtcggggttcgaactctagacaccccacttattcaccttataaggtgaattctagccattaggct 2366467  T
Q  116 atctgac 122  Q
    | |||||    
T  2366468 acctgac 2366474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31475940 - 31475850
Alignment:
Q  1 tcccgtgagcttagttcagttggtagg-acattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    |||||||||| ||| |||||||| ||| ||||||||||||||||| || ||| ||| || | ||| || |||| || ||||||||||||||    
T  31475940 tcccgtgagcatagctcagttggcagggacattgcattattatatgcaggggctggggttcgaacccctgacaccccacttattcacttta 31475850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 4042336 - 4042267
Alignment:
Q  32 tgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||||| || |||| ||||| | |||| |||||| || ||||||||| |||||||||| ||||    
T  4042336 tgcattattatatgcaggggtcggagttcgaacttcggacacccaacttattcattttataaggtgaatt 4042267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25087049 - 25087005
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatata 45  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||    
T  25087049 tcccgtgagcatagtttagttcgtaggacaatgcattattatata 25087005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25818282 - 25818382
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||| | ||||||||||||| || ||| |||||| | ||| ||| |||  | ||||||||||  |||||||| |||    
T  25818282 tcccgtgagcataactcagttggtaggataatgcattattatatgcaggggctggagttcgaaccccgaacactccacttattcaccatataaggtgaat 25818381  T
Q  101 t 101  Q
    |    
T  25818382 t 25818382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42887150 - 42887250
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| |||||||||| |||| | ||||||||||| || ||| ||  || | ||| ||||||| || ||||||| || ||||||||| |||    
T  42887150 tcccgtgagcatagctcagttggtacgacaattcattattatatgcaggggctgaggttcgaaccccggacaccccacttatttaccttataaggtgaat 42887249  T
Q  101 t 101  Q
    |    
T  42887250 t 42887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45197314 - 45197358
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatata 45  Q
    |||||||||| ||| ||||||||||||||| ||||||||| ||||    
T  45197314 tcccgtgagcatagctcagttggtaggacaatgcattattttata 45197358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 12856182 - 12856301
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaattt 102  Q
    |||||||| ||| ||||||||||||| | |||| ||||||||  | |||| ||||| | ||| ||||||| || |||||||||| ||||||||| ||||     
T  12856182 ccgtgagcatagctcagttggtaggataatgcactattatatgaaggggtcggagttcgaaccccggacaccccacttattcaccttataaggtgaattc 12856281  T
Q  103 caaccactaggctatctgac 122  Q
     |||||||| ||||||||||    
T  12856282 taaccactatgctatctgac 12856301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 32885686 - 32885784
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| || |||| ||||| | |||  |||||| || |||||||||| ||||||||| ||||    
T  32885686 ccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggtcggagttcgaacctcggacaccccacttattcaccttataaggtgaatt 32885784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 34773779 - 34773682
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||| ||||||||||| ||||||| ||||||||||||| || ||| ||  || | ||| ||||||| || |||||||||||||||||||| ||||    
T  34773779 cgtgagcatagttcagttgataggacaatgcattattatatgcaggggctgaggttcgaaccccggacaccccacttattcactttataaggtgaatt 34773682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47018045 - 47017945
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| || |||  || || | ||| ||||||| || |||||||||| ||||||||| |||    
T  47018045 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaat 47017946  T
Q  101 t 101  Q
    |    
T  47017945 t 47017945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21476180 - 21476065
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||| ||||| ||||||||||||||| || |||| |  || | |||||||||||||| |||||||||  |||||| || |||    
T  21476180 tcccgtgagcatagctcagttgataggatattgcattattatatgcaggggtcgatgttcgaactccggacatcccacttattcatcttataaagtgaat 21476081  T
Q  101 ttcaaccactaggcta 116  Q
    |  | |||||||||||    
T  21476080 tctagccactaggcta 21476065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 3465594 - 3465679
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||||||||||| ||||||||||||| || |||  ||||| | ||| ||||||| || |||||||||| ||||||||| ||||    
T  3465594 tcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcaccttataaggtgaatt 3465679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9924852 - 9924973
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| |||||||||||||||||||  |||||||||||| || |||| || || | ||| |||||||  | |||||||||| || || ||| |||    
T  9924852 tcccgtgagcatagttcagttggtaggacaacgcattattatatgcaggggtcggggttcgaaccccggacactccacttattcaccttgtatggtgaat 9924951  T
Q  101 ttcaaccactaggctatctgac 122  Q
    || | ||||||| ||| |||||    
T  9924952 tttatccactagactacctgac 9924973  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 26203883 - 26203786
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| | ||||||| ||   ||| || ||||||| |||||||||  ||||||||| ||||    
T  26203883 cgtgagcatagctcagttggtaggacagtgcattattatataaaggggttggggtttgaacccctgacatcccacttattcatcttataaggtgaatt 26203786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13211451 - 13211351
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||  ||||||||||||||||||| ||||||||||||| || |||| || || | ||| |||||||  | ||||||||| || ||||||| |||    
T  13211451 tcccgtgagtatagttcagttggtaggacaatgcattattatatgcatgggtcggggttcgaaccccggacactccacttattcatttgataaggtaaat 13211352  T
Q  101 t 101  Q
    |    
T  13211351 t 13211351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 45350272 - 45350364
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    |||||| ||| ||| ||||||||||||||| ||||||||||||| ||  ||| ||||| | ||| ||||||| || |||||||||| ||||||    
T  45350272 tcccgtcagcatagctcagttggtaggacagtgcattattatatgcagaggtcggagttcgaaccccggacaccccacttattcaccttataa 45350364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 45359751 - 45359843
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    |||||| ||| ||| ||||||||||||||| ||||||||||||| ||  ||| ||||| | ||| ||||||| || |||||||||| ||||||    
T  45359751 tcccgtcagcatagctcagttggtaggacagtgcattattatatgcagaggtcggagttcgaaccccggacaccccacttattcaccttataa 45359843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43115264 - 43115307
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  43115264 tcccgtgagcttagttcagttggtaggacaatgtattattatat 43115307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50783533 - 50783490
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  50783533 tcccgtgagcatagctcagttggtaggacattgcattattatat 50783490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 3544529 - 3544431
Alignment:
Q  3 ccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    |||||| | ||| ||||||||||||||| ||||||||||||| ||| ||  || || | ||| ||||||  ||||||||||||| ||||||||| ||||    
T  3544529 ccgtgaacatagctcagttggtaggacaatgcattattatatgcaaaggccggggttcgaaccccggactccctacttattcacattataaggtgaatt 3544431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 16201307 - 16201385
Alignment:
Q  16 tcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||||||||||||| |||||||||| ||  | ||||||| ||   |||||||||||||||| |||||||| |||||||    
T  16201307 tcagttggtaggacaatgcattattacatgtaggggttggggtttgaactccggacatcctatttattcaccttataag 16201385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9172470 - 9172349
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| || |||| || || | |||  || ||| ||||| ||||||| | ||||||| |||    
T  9172470 tcccgtgagcataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctcgaacaccctacgtattcacctaataaggtaaat 9172371  T
Q  101 ttcaaccactaggctatctgac 122  Q
    |  |  ||||||||||||||||    
T  9172370 tctagtcactaggctatctgac 9172349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 40150469 - 40150558
Alignment:
Q  2 cccgtgagcttagttcagttggtagga-cattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    ||||||||| |||||||||||| |||| || |||||||||||||||| |||| || || | ||| ||||||| |  ||||||||||||||    
T  40150469 cccgtgagcatagttcagttggcaggaacaatgcattattatatacaggggtcggggttcgaaccccggacacctcacttattcacttta 40150558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 49089376 - 49089275
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||||||| | ||||||||||||| | ||||||||||| || |||  | ||| | ||| || ||||| | |||||||||| ||||||||| |||    
T  49089376 tcccgtgagcttagcttagttggtaggacaatacattattatatgcaggggccgaagttcgaacccctgacattccacttattcaccttataaggtgaat 49089277  T
Q  101 tt 102  Q
    ||    
T  49089276 tt 49089275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 55656207 - 55656114
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||||||| ||  ||||||||| ||||| | ||||||||||| || |||  ||||| ||||  ||||||| ||||||||||||| |||||||    
T  55656207 tcccgtgagcataactcagttggttggacaatacattattatatgcaggggccggagttcaaatcccggacaccctacttattcaccttataag 55656114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 11872894 - 11872958
Alignment:
Q  26 ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcacttta 90  Q
    ||||| |||||||||||||  | |||| ||||| | ||| |||||||||||||||||||||||||    
T  11872894 ggacaatgcattattatatgtaggggtcggagttcgaaccccggacatcctacttattcacttta 11872958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26253948 - 26254040
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataa 93  Q
    |||| ||||| ||||||||||||||| ||| || |||||||||| || |||| ||||| | ||  |||||||  | |||||||||||||||||    
T  26253948 tcccatgagcatagttcagttggtagaacaatgtattattatatgcaggggtcggagttcgaatcccggacactccacttattcactttataa 26254040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 44074869 - 44074969
Alignment:
Q  21 tggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggctatctg 120  Q
    |||||||||| ||||||||||||| || || ||| ||| | ||  ||||||| || |||||||||| ||||||||| ||||| | ||| ||||||| |||    
T  44074869 tggtaggacaatgcattattatatgcagggattgaagttcgaatcccggacaccccacttattcaccttataaggtgaattttagccattaggctacctg 44074968  T
Q  121 a 121  Q
    |    
T  44074969 a 44074969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20266858 - 20266901
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||||||| ||| ||||||||||| |||||||||||||    
T  20266858 tcccgtgagcttagctcatttggtaggacaatgcattattatat 20266901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 35333071 - 35332972
Alignment:
Q  17 cagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggcta 116  Q
    |||||||||||||| ||||||||||||| ||  ||  ||||| | ||||||| ||| || | |||||||| ||||||| |  |||| |||||||||||||    
T  35333071 cagttggtaggacaatgcattattatatgcagtggccggagttcgaactccgaacaccccatttattcaccttataagatgcattttaaccactaggcta 35332972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46735068 - 46735025
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  46735068 tcccgtgagcatagctcagttggtaggacactgcattattatat 46735025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50657876 - 50657919
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||    
T  50657876 tcccgtgagcatagctcagttggtaggacaatgcattattatat 50657919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 38433318 - 38433428
Alignment:
Q  12 tagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccacta 111  Q
    ||||||||||| ||||||| |||||||||||||  | | || ||||| | ||| || |||| || |||||||||| ||||||||| ||||  ||| ||||    
T  38433318 tagttcagttgataggacaatgcattattatatgtaggagtcggagttcgaaccccagacaccccacttattcaccttataaggtgaattctaacaacta 38433417  T
Q  112 ggctatctgac 122  Q
     |||| |||||    
T  38433418 agctacctgac 38433428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 48968309 - 48968188
Alignment:
Q  2 cccgtgagcttagttcagttggtagg-acattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    ||||||||| |||||||||||| ||| ||| ||||||||||||| || |||  || || | ||| ||||||| || |||||||||||||| || || |||    
T  48968309 cccgtgagcatagttcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcacttta-aaagtgaat 48968211  T
Q  101 ttc-aaccactaggctatctgac 122  Q
    ||| | ||||||||||| |||||    
T  48968210 ttctagccactaggctacctgac 48968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 55266534 - 55266443
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    |||||||||| ||| ||||||||||| ||| ||||||||||||| || |||| ||||| | ||  ||| ||||||||  ||||||| |||||||    
T  55266534 tcccgtgagcatagctcagttggtagaacaatgcattattatatgcaggggtcggagttcgaatcccgaacatccta--tattcaccttataag 55266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 29269413 - 29269293
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||||||||| ||||| |||||||||||||  | ||| |||  | | ||| ||||||| || |||||||||  ||||| ||| |||    
T  29269413 tcccgtgagcatagctcagttggt-ggacaatgcattattatatgtaggggctgggattcgaaccccggacaccccacttattcatcttatatggtgaat 29269315  T
Q  101 ttcaaccactaggctatctgac 122  Q
    || | ||||||||||| |||||    
T  29269314 tttagccactaggctacctgac 29269293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 33536287 - 33536332
Alignment:
Q  67 cggacatcctacttattcactttataaggtcaatttcaaccactag 112  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||    
T  33536287 cggacatccaatttattcattttataaggtgaatttcaaccactag 33536332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 8690212 - 8690331
Alignment:
Q  4 cgtgagcttagttcagttggta-ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaattt 102  Q
    ||||||| ||| |||||||| | ||||| ||||||||||||| || |||| || || | ||| ||||||| || |||||||||||||| || || |||||    
T  8690212 cgtgagcatagctcagttggcaaggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcacttta-aaagtgaattt 8690310  T
Q  103 c-aaccactaggctatctgac 122  Q
    | | ||||||||||| |||||    
T  8690311 ctagccactaggctacctgac 8690331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 9285758 - 9285658
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| ||| ||||||||||| ||||||||||||| || ||  ||| || | ||| || |||| || ||||||| || ||||||||| |||    
T  9285758 tcccgtgagcatagctcaattggtaggacaatgcattattatatgcagggtctggggttcgaaccccagacaccccacttattaaccttataaggtgaat 9285659  T
Q  101 t 101  Q
    |    
T  9285658 t 9285658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 12820504 - 12820384
Alignment:
Q  2 cccgtgagcttagttcagttggtag-gacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    ||||||||| ||| |||||||| || |||| |||||| |||||| || |||| || ||   ||| | ||||| || |||||||||| ||||||||| |||    
T  12820504 cccgtgagcatagctcagttggcagagacaatgcattgttatatgcaggggtcggggttagaaccctggacaccccacttattcaccttataaggtgaat 12820405  T
Q  101 ttcaaccactaggctatctga 121  Q
    |  | ||||||||||||||||    
T  12820404 tctagccactaggctatctga 12820384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 24234173 - 24234073
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| |||||||||||| || ||||||||||||| || |||  || ||   ||| ||||||| || |||||||||  ||||||||| |||    
T  24234173 tcccgtgagcatagctcagttggtaggtcaatgcattattatatgcaggggccggggtttgaaccccggacaccccacttattcatcttataaggtgaat 24234074  T
Q  101 t 101  Q
    |    
T  24234073 t 24234073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 35031382 - 35031422
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatat 44  Q
    ||||||| ||| ||||||||||||||| |||||||||||||    
T  35031382 cgtgagcatagctcagttggtaggacaatgcattattatat 35031422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 41003245 - 41003150
Alignment:
Q  26 ggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactaggctatctgac 122  Q
    ||||| |||||| |||||| || |||||| ||| | ||||||||||| || |||||||||| ||| ||| | ||||  ||||||||||||| |||||    
T  41003245 ggacaatgcattgttatatgcaggggttg-agttcgaactccggacaccccacttattcaccttacaagatgaattctaaccactaggctacctgac 41003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 46222960 - 46222881
Alignment:
Q  32 tgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccactag 112  Q
    ||||||||||||| || | |||||||| | |||||| || | |||| |||||||||||| || || |||||||||||||||    
T  46222960 tgcattattatatgcaggagttggagttcgaactccagataccctatttattcacttta-aaagtgaatttcaaccactag 46222881  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47678664 - 47678628
Alignment:
Q  1 tcccgtgagcttagttcagttggta-ggacattgcat 36  Q
    ||||||||||||||||||||||||| |||||||||||    
T  47678664 tcccgtgagcttagttcagttggtagggacattgcat 47678628  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 53291438 - 53291538
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||| | ||||||||||||| || |||| ||| |   ||  ||||||| || |||||||||| ||||||||| |||    
T  53291438 tcccgtgagcataactcagttggtaggataatgcattattatatgcatgggtcggaatttgaatcccggacacccaacttattcaccttataaggtgaat 53291537  T
Q  101 t 101  Q
    |    
T  53291538 t 53291538  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 55345765 - 55345813
Alignment:
Q  6 tgagcttagttcagttggtaggacattgcattattatatacaagggttg 54  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||| ||||||    
T  55345765 tgagcatagctcagttggtaggacaatgcgttattatatacaggggttg 55345813  T

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Target: scaffold1086 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2484 - 2605
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||| ||  ||||| |||   ||| ||||||| || |||||||||| ||||||||| |||    
T  2484 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagaggttgaagtttgaaccccggacaccccacttattcaccttataaggtgaat 2583  T
Q  101 ttcaaccactaggctatctgac 122  Q
    | || ||||||| ||| |||||    
T  2584 tccagccactagactacctgac 2605  T

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Target: scaffold0178 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 16078 - 16154
Alignment:
Q  18 agttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataag 94  Q
    ||||| ||||||| ||||||||||||| || || | ||||| | ||| ||||||||||||||||||||| |||||||    
T  16078 agttgataggacaatgcattattatatgcagggatcggagttcgaaccccggacatcctacttattcaccttataag 16154  T

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Target: scaffold0178; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 4322 - 4419
Alignment:
Q  4 cgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatt 101  Q
    ||||||| ||| ||||||| ||||||| | ||||||||||| || |||| || || | ||| |||||||  | |||||||||||||||||||| ||||    
T  4322 cgtgagcatagctcagttgataggacaatacattattatatgcaggggtcggggttcgaaccccggacactccacttattcactttataaggtgaatt 4419  T

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Target: scaffold0533 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 9333 - 9443
Alignment:
Q  12 tagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccacta 111  Q
    |||||||||| |||||||| |||||||||| || || |||| || || | || |||| |||  | |||||||||| ||||||||| ||||  | ||||||    
T  9333 tagttcagttagtaggacaatgcattattacatgcaggggtcggggttcgaattccgaacactccacttattcaccttataaggtgaattctagccacta 9432  T
Q  112 ggctatctgac 122  Q
    |||||||||||    
T  9433 ggctatctgac 9443  T

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Target: scaffold0343 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 8573 - 8666
Alignment:
Q  18 agttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaatttcaaccacta 111  Q
    ||||| ||||||| |||||||||||||  | ||||||| || | ||| ||| ||| ||||||||||||| |||||| || ||||  ||||||||    
T  8573 agttgataggacaatgcattattatatgtaggggttggggttcgaaccccgaacaccctacttattcaccttataatgtgaattctaaccacta 8666  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 101827 - 101927
Alignment:
Q  1 tcccgtgagcttagttcagttggtaggacattgcattattatatacaagggttggagtacaaactccggacatcctacttattcactttataaggtcaat 100  Q
    |||||||||| ||| |||| |||||||| | ||||||||||||| || |||  || || | ||| ||  |||||| |||||||||| ||||||||| |||    
T  101827 tcccgtgagcatagctcagctggtaggataatgcattattatatgcaggggccggggttcgaaccccaaacatcccacttattcaccttataaggtgaat 101926  T
Q  101 t 101  Q
    |    
T  101927 t 101927  T

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