View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_low_2 (Length: 640)
Name: NF5615_low_2
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 172 - 585
Target Start/End: Complemental strand, 18220654 - 18220241
Alignment:
| Q |
172 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
271 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
18220555 |
T |
|
| Q |
272 |
agatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaagattca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220554 |
agatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaagattca |
18220455 |
T |
|
| Q |
372 |
gacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatattagaaaggaattgggtgttcaagatccttactggac |
471 |
Q |
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| T |
18220454 |
gacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatattagaaaggaattgggtgttcaagatccttactggac |
18220355 |
T |
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| Q |
472 |
tcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagagagataaaggaggaaataattaagttgaaaagg |
571 |
Q |
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| T |
18220354 |
tcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttactagtcatgaactcagagagataaaggaggaaataattaagttgaaaagg |
18220255 |
T |
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| Q |
572 |
tattgccaatttca |
585 |
Q |
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| T |
18220254 |
tattgccaatttca |
18220241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 18220818 - 18220719
Alignment:
| Q |
8 |
ccaagaatatggattgatagatgggctgctgataggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccacttg |
107 |
Q |
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| T |
18220818 |
ccaaaaatatggattgatagatgggctgctgagaggtaaatggttatttgtatttaaagatgtaacctttttttcagtacacagttcagttttccacttg |
18220719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 171 - 585
Target Start/End: Complemental strand, 43012431 - 43012017
Alignment:
| Q |
171 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
270 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
43012332 |
T |
|
| Q |
271 |
gagatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaagattc |
370 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43012331 |
tagatcagaagcaagaaagtatattggtgacacaggtttacttgatcatttgttgaaacacatggctggaaaagtggcaccaggaggagttgatagattc |
43012232 |
T |
|
| Q |
371 |
agacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatattagaaaggaattgggtgttcaagatccttactgga |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||| |
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| T |
43012231 |
agacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatcttagaaaggaattggg---tcaagacccctactgga |
43012135 |
T |
|
| Q |
471 |
ctcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagagag---ataaaggaggaaataattaagttgaa |
567 |
Q |
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||||||||||||| ||||||||||| ||||||||| |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
43012134 |
ctcctccccctggctggaagcctggagacagcattgcaccagaatatgttactagtaatgaactcagagagatcataaaggaggaaataattaagttgaa |
43012035 |
T |
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| Q |
568 |
aaggtattgccaatttca |
585 |
Q |
| |
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| T |
43012034 |
acggtattgccagtttca |
43012017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 43012583 - 43012495
Alignment:
| Q |
18 |
ggattgatagatgggctgctgataggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccacttg |
107 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
43012583 |
ggatttatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaacc-ttttttcaatacacagttcagttttccacttg |
43012495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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