View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5615_low_3 (Length: 515)
Name: NF5615_low_3
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 255 - 499
Target Start/End: Complemental strand, 40085860 - 40085606
Alignment:
| Q |
255 |
caagatacagtggtaatcatttatttaatttgtgaaatttaatatat--------gtat--aatagagtaactcagcttgaagttatctgtcgtgtaact |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085860 |
caagatacagtggtaatcatttatttaatttgtgaaagttaatatgtataataaagtattaaatagagtaactcagcttgaagttatctgtcgtgtaact |
40085761 |
T |
|
| Q |
345 |
taagcttccctacagaagctgctaataatacagctagctgtccattttctttatctatattaagggccctagctctaattgccaatttttgaagtaatct |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
40085760 |
taagcttccctacagaagctgctaataatacagctagctgtccattttctttatctatattaagggccctaactctaattgccattttttgaagtaatct |
40085661 |
T |
|
| Q |
445 |
tgaaacatgacnnnnnnngataagagcaaaggaagcaaactcaccaggtacatga |
499 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40085660 |
tgaaacatgacaaaaaaagataagagcaaaggaagcaagctcaccaggtacatga |
40085606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 40086037 - 40085890
Alignment:
| Q |
86 |
ttagagttgcaccattggagtaaaatatgagtgagttgcttcagaataacgtggctttaattgggtccacaaaattattttagatgagttcaacattttg |
185 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
40086037 |
ttagagttgcactattggagtaaaatatgagtgagttgcttcagaataacgtggctttaattggatccacaaaattactttagatgagttcaacattttg |
40085938 |
T |
|
| Q |
186 |
gtggtaccttggtaccattctatttaataatatcttttttggcttttc |
233 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085937 |
gtggtactttggtaccattctatttaataatatcttttttggcttttc |
40085890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 11730659 - 11730623
Alignment:
| Q |
92 |
ttgcaccattggagtaaaatatgagtgagttgcttca |
128 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |
|
|
| T |
11730659 |
ttgcaccattggagtaaaaaataagtgagttgcttca |
11730623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University