View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5615_low_7 (Length: 365)

Name: NF5615_low_7
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5615_low_7
NF5615_low_7
[»] chr1 (6 HSPs)
chr1 (125-352)||(9804036-9804273)
chr1 (149-323)||(9813828-9814003)
chr1 (1-91)||(9816909-9817000)
chr1 (148-287)||(9829154-9829294)
chr1 (17-91)||(9804307-9804373)
chr1 (160-287)||(9755702-9755830)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-91)||(11046-11136)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 125 - 352
Target Start/End: Complemental strand, 9804273 - 9804036
Alignment:
Q  125 ctatatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9804273 ctatatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctgaaatgcaaggtagtggaggtatttctctgccaacaagttctgc 9804174  T
Q  225 agcagaaaagggaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag- 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9804173 agcagaaaagcgaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaagg 9804074  T
Q  324 ---------aatgtgtaagcaaaattcatggtgataag 352  Q
             |||||||||||||||||||||||||||||    
T  9804073 ctcaaatgaaatgtgtaagcaaaattcatggtgataag 9804036  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 149 - 323
Target Start/End: Complemental strand, 9814003 - 9813828
Alignment:
Q  149 gtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttta 247  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||| |||||    
T  9814003 gtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagtggaagtatttctctgtcaacaaattctgcagcagaaaagggaaagaattttta 9813904  T
Q  248 ctccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag 323  Q
    ||||||||| ||||||| |||||| ||||  |||||||||||||||||||||||||  ||||||||||||||||||    
T  9813903 ctccaattaggatcaaatcaatgacgaaaaatctgattttataaggaggaagaaagtgagtaggctccgtctcaag 9813828  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9817000 - 9816909
Alignment:
Q  1 cataattacactatacgtatcacttatacactattgtttttt-ataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat 91  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9817000 cataattacactatacgtatcacttatatactattgtttttttataagtcatttttctgaatatgcaaatttgacttagtattgtcatacat 9816909  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 9829294 - 9829154
Alignment:
Q  148 agtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttt 246  Q
    |||| |||| ||||| |||| || ||||||||| | ||||||||||||  | ||| ||||||| ||||  ||||||||||||||||||| ||||| || |    
T  9829294 agtaacaagaattctaattttcaagatgtatctgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgt 9829195  T
Q  247 actccaattatgatcaaaacaatgaggaaatttctgatttt 287  Q
    |||||||||||||||||| ||| ||||||  ||||||||||    
T  9829194 actccaattatgatcaaagcaacgaggaagattctgatttt 9829154  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 9804373 - 9804307
Alignment:
Q  17 gtatcacttatacactattgttttttataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat 91  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  9804373 gtatcacttatacactattgttttttataagtc--------gaatatgcaaatttgacttagtattgtcatacat 9804307  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 9755830 - 9755702
Alignment:
Q  160 tcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaagggaa-gaacttttactccaattatg 258  Q
    |||||||| || ||||| ||| | |||||||| |||| |  |||||||| | ||||| |||||||| || ||||||||| ||| || |||||||||||||    
T  9755830 tcttattttcaagatgtgtctgatatgcaaggcagtgaatatatttctcagtcaacatgttctgcaacaaaaaagggaaagaatttgtactccaattatg 9755731  T
Q  259 atcaaaacaatgaggaaatttctgatttt 287  Q
    |||||| || |||||||  ||||||||||    
T  9755730 atcaaagcagtgaggaagattctgatttt 9755702  T

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Target: scaffold0432 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 11136 - 11046
Alignment:
Q  1 cataattacactatacgtatcacttatacactattgttttttataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat 91  Q
    ||||||||||||  |||||||| ||||||| |||| |||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||    
T  11136 cataattacactccacgtatcagttatacaatatttttttttataagtcatttttctaaataagcaaatttgacttggtattgtcatacat 11046  T

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