View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5615_low_8 (Length: 328)
Name: NF5615_low_8
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5615_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 49238744 - 49238598
Alignment:
| Q |
10 |
attattctagcatacattatacatgtaatttttcacccttttacttcattacaataaagggtttcctaattaaaaacaactacaataatactaattataa |
109 |
Q |
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| T |
49238744 |
attattctagcatacattatacatgtaatttttcacccttttacttcattacaataaagggtttcctaattaaaaacaactacaataatactgattataa |
49238645 |
T |
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| Q |
110 |
taattagccattaatcctaaaaaagaaagcatgaattcaagcataac |
156 |
Q |
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| T |
49238644 |
taattagccattaatcctaaaaaagaaagcatcaattcaagcataac |
49238598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 49238508 - 49238472
Alignment:
| Q |
274 |
gtgttgttaccttcttgatgagaggagaggttgacgt |
310 |
Q |
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| T |
49238508 |
gtgttgttacattcttgatgagaggagaggttgacgt |
49238472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 27028623 - 27028680
Alignment:
| Q |
13 |
attctagcatacattatacatg--taatttttcacccttttacttcattacaataaag |
68 |
Q |
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| T |
27028623 |
attctagcatacattatacatgcataatttttcacccttttactacattacaataaag |
27028680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 27028745 - 27028796
Alignment:
| Q |
67 |
agggtttcctaattaaaaacaactacaataatactaattataataattagccat |
120 |
Q |
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| T |
27028745 |
agggtttcctaatcaaa--caacaacaataatactaattataataattagccat |
27028796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 27028908 - 27028941
Alignment:
| Q |
277 |
ttgttaccttcttgatgagaggagaggttgacgt |
310 |
Q |
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| T |
27028908 |
ttgttaccttcttgatgagaggagaggttgacgt |
27028941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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