View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5615_low_9 (Length: 319)

Name: NF5615_low_9
Description: NF5615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5615_low_9
NF5615_low_9
[»] chr3 (1 HSPs)
chr3 (253-309)||(27539608-27539664)
[»] chr6 (2 HSPs)
chr6 (19-104)||(22459081-22459166)
chr6 (157-235)||(22459195-22459273)
[»] scaffold0597 (1 HSPs)
scaffold0597 (19-104)||(7669-7753)
[»] chr2 (2 HSPs)
chr2 (19-104)||(15497821-15497906)
chr2 (157-253)||(15497935-15498031)
[»] chr1 (2 HSPs)
chr1 (252-309)||(15200148-15200205)
chr1 (252-309)||(15219233-15219290)
[»] chr4 (1 HSPs)
chr4 (253-309)||(16599462-16599518)
[»] chr5 (1 HSPs)
chr5 (72-104)||(22127418-22127450)
[»] scaffold0221 (1 HSPs)
scaffold0221 (157-250)||(14885-14978)


Alignment Details
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 27539664 - 27539608
Alignment:
Q  253 gaggaagtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg 309  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27539664 gagggagtagttcctgtcagatcagaggcagtgcccgcagttttaccgactcctatg 27539608  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 22459081 - 22459166
Alignment:
Q  19 cctccacctccagcaccacacaattcagctacggctgtccctgtacctatcctcgttcagcaagacattacactcacggcagagga 104  Q
    ||||||||||||||||||||  || |||| ||| |||||||||  | | ||| ||||||||||||||||||||||||| |||||||    
T  22459081 cctccacctccagcaccacatcatacagccacgactgtccctgcccatgtccccgttcagcaagacattacactcacgacagagga 22459166  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 22459195 - 22459273
Alignment:
Q  157 aattcaaatgcacagcatgtggcagtcacaaccacgatcaatcatgtcgagaagaatttggagcagccaagtgctattc 235  Q
    |||||||||||||| |||||||||| |||||||| || || ||||| ||   |||||||||||||| |||||| |||||    
T  22459195 aattcaaatgcacaacatgtggcagacacaaccatgagcactcatgacgcagagaatttggagcagacaagtgatattc 22459273  T

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Target: scaffold0597 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 7753 - 7669
Alignment:
Q  19 cctccacctccagcaccacacaattcagctacggctgtccctgtacctatcctcgttcagcaagacattacactcacggcagagga 104  Q
    ||||||||||||||||||||  || |||| | || ||||||| | | | |||||||||| ||||||||||||||||||||||||||    
T  7753 cctccacctccagcaccacatcatacagccatggttgtccct-tccatgtcctcgttcaacaagacattacactcacggcagagga 7669  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 15497821 - 15497906
Alignment:
Q  19 cctccacctccagcaccacacaattcagctacggctgtccctgtacctatcctcgttcagcaagacattacactcacggcagagga 104  Q
    ||||||||||||||||||||  || |||| |||| ||||||||  | | ||| |||||| ||||| ||||||||||||||||||||    
T  15497821 cctccacctccagcaccacatcatacagccacggatgtccctgcccatgtccccgttcaacaagagattacactcacggcagagga 15497906  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 15497935 - 15498031
Alignment:
Q  157 aattcaaatgcacagcatgtggcagtcacaaccacgatcaatcatgtcgagaagaatttggagcagccaagtgctattcctattcaggcagccacag 253  Q
    |||||| ||||||| ||||||| || | |||||| || || ||||| || | |||||||||||||| |||||| ||| || ||||||||||||||||    
T  15497935 aattcagatgcacaacatgtggaagacgcaaccatgagcactcatgacgcggagaatttggagcagacaagtgatataccaattcaggcagccacag 15498031  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 15200205 - 15200148
Alignment:
Q  252 agaggaagtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg 309  Q
    |||||||||||||||||||||||||||||  ||  | |||||||||||||||||||||    
T  15200205 agaggaagtagttcctgtcagatcagaggtagtagctgcagttttaccgactcctatg 15200148  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 15219290 - 15219233
Alignment:
Q  252 agaggaagtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg 309  Q
    ||||||||||||||||||||||||| |||| ||||  ||||||||||| |||||||||    
T  15219290 agaggaagtagttcctgtcagatcataggcagtgcttgcagttttaccaactcctatg 15219233  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 16599518 - 16599462
Alignment:
Q  253 gaggaagtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg 309  Q
    |||| |||| |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  16599518 gagggagtaattcctgtcagatcagaggcaatgccctcagttttaccgactcctatg 16599462  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 22127418 - 22127450
Alignment:
Q  72 cgttcagcaagacattacactcacggcagagga 104  Q
    |||||||||||||||||||||||||||||||||    
T  22127418 cgttcagcaagacattacactcacggcagagga 22127450  T

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Target: scaffold0221 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 14978 - 14885
Alignment:
Q  157 aattcaaatgcacagcatgtggcagtcacaaccacgatcaatcatgtcgagaagaatttggagcagccaagtgctattcctattcaggcagcca 250  Q
    |||||| ||||||| ||||||||||  ||||||| || || ||||| ||   ||||||||||| || |||||| ||| ||||||| ||||||||    
T  14978 aattcagatgcacaacatgtggcagaaacaaccatgagcactcatgacgcagagaatttggagtagacaagtgatatacctattcgggcagcca 14885  T

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