View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5616-Insertion-1 (Length: 183)

Name: NF5616-Insertion-1

Description: NF5616

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5616-Insertion-1

[»] chr4 (6 HSPs)

Alignment Details

Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 6)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 176; E-Value: 5e-95

Query Start/End: Original strand, 8 - 183

Target Start/End: Original strand, 21185699 - 21185874

Alignment:

Q	8	gcttagtgagtcaagatgatataattctcggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaagaaatctaggac	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21185699	gcttagtgagtcaagatgatataattctcggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaagaaatctaggac	21185798	T

Q	108	tgggaatcatttggagactaagtacccttatgtctgtcatgctgaagtaaatgctattcttaacacaaaccatgca	183	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21185799	tgggaatcatttggagactaagtacccttatgtctgtcatgctgaagtaaatgctattcttaacacaaaccatgca	21185874	T

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Target: chr4; HSP #2

Raw Score: 168; E-Value: 3e-90

Query Start/End: Original strand, 8 - 183

Target Start/End: Original strand, 27119297 - 27119472

Alignment:

Q	8	gcttagtgagtcaagatgatataattctcggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaagaaatctaggac	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27119297	gcttagtgagtcaagatgatataattctcggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaagaaatctaggac	27119396	T

Q	108	tgggaatcatttggagactaagtacccttatgtctgtcatgctgaagtaaatgctattcttaacacaaaccatgca	183	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27119397	tgggaatcctttggagactaagtacccttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatgca	27119472	T

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Target: chr4; HSP #3

Raw Score: 52; E-Value: 4e-21

Query Start/End: Original strand, 37 - 96

Target Start/End: Original strand, 42685887 - 42685946

Alignment:

Q	37	ggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaag	96	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42685887	ggcattggttataatggatttccaagaggttgttctgatgacaagctaccatgggccaag	42685946	T

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Target: chr4; HSP #4

Raw Score: 44; E-Value: 3e-16

Query Start/End: Original strand, 135 - 182

Target Start/End: Original strand, 42686191 - 42686238

Alignment:

Q	135	ttatgtctgtcatgctgaagtaaatgctattcttaacacaaaccatgc	182	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42686191	ttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatgc	42686238	T

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Target: chr4; HSP #5

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 8 - 38

Target Start/End: Original strand, 42685772 - 42685802

Alignment:

Q	8	gcttagtgagtcaagatgatataattctcgg	38	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42685772	gcttagtgagtcaagatgatataattctcgg	42685802	T

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Target: chr4; HSP #6

Raw Score: 28; E-Value: 0.0000009

Query Start/End: Original strand, 95 - 134

Target Start/End: Original strand, 42686035 - 42686074

Alignment:

Q	95	agaaatctaggactgggaatcatttggagactaagtaccc	134	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	42686035	agaaatctaggaccgggaatcctttggagaccaagtaccc	42686074	T

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