View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5616-Insertion-11 (Length: 215)

Name: NF5616-Insertion-11
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5616-Insertion-11
NF5616-Insertion-11
[»] chr8 (6 HSPs)
chr8 (111-215)||(15348435-15348539)
chr8 (24-104)||(15272013-15272096)
chr8 (128-215)||(12199897-12199984)
chr8 (128-215)||(12444325-12444412)
chr8 (153-215)||(12194916-12194978)
chr8 (153-215)||(12439344-12439406)
[»] chr4 (29 HSPs)
chr4 (125-215)||(48735716-48735806)
chr4 (126-215)||(48870130-48870219)
chr4 (126-215)||(48885816-48885905)
chr4 (125-215)||(7770991-7771081)
chr4 (125-215)||(45372458-45372548)
chr4 (129-215)||(48170990-48171076)
chr4 (154-215)||(48862857-48862918)
chr4 (155-215)||(48156828-48156888)
chr4 (153-213)||(48891024-48891084)
chr4 (153-215)||(7789704-7789766)
chr4 (154-215)||(45366622-45366683)
chr4 (128-215)||(48148086-48148173)
chr4 (157-215)||(33134227-33134285)
chr4 (140-212)||(50668645-50668717)
chr4 (153-215)||(7238121-7238183)
chr4 (154-212)||(45385191-45385249)
chr4 (163-215)||(7904657-7904709)
chr4 (155-215)||(48902567-48902627)
chr4 (163-215)||(49041539-49041591)
chr4 (153-215)||(7813095-7813157)
chr4 (153-215)||(7822584-7822646)
chr4 (162-215)||(7877344-7877397)
chr4 (139-212)||(48875447-48875520)
chr4 (153-213)||(7800252-7800312)
chr4 (153-215)||(7907940-7908002)
chr4 (153-198)||(7786058-7786103)
chr4 (154-215)||(33133653-33133714)
chr4 (158-215)||(48898342-48898399)
chr4 (156-212)||(47207552-47207608)
[»] chr5 (6 HSPs)
chr5 (156-212)||(42562735-42562791)
chr5 (156-215)||(29712870-29712929)
chr5 (156-212)||(29687669-29687725)
chr5 (154-215)||(29695768-29695829)
chr5 (169-212)||(178650-178693)
chr5 (153-215)||(1812040-1812102)
[»] chr1 (4 HSPs)
chr1 (162-215)||(24322086-24322139)
chr1 (157-215)||(24415456-24415514)
chr1 (157-215)||(24309796-24309854)
chr1 (154-215)||(24340030-24340091)
[»] chr3 (4 HSPs)
chr3 (153-215)||(11024938-11025000)
chr3 (153-200)||(11015941-11015988)
chr3 (153-215)||(11006363-11006425)
chr3 (153-215)||(47452308-47452370)
[»] scaffold0508 (1 HSPs)
scaffold0508 (154-215)||(11878-11939)
[»] chr7 (1 HSPs)
chr7 (129-213)||(48883373-48883460)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 15348435 - 15348539
Alignment:
Q  111 actaccttacctatctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttct 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15348435 actaccttacctgtctcatgaattaatagttcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttct 15348534  T
Q  211 cttat 215  Q
    |||||    
T  15348535 cttat 15348539  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 15272013 - 15272096
Alignment:
Q  24 gtattcgtaaccctaaatcaagtggaccgaaatgaagaaaagaaacc---gtcgcagagggagtaagcgcactgagaagaaaaa 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||    
T  15272013 gtatttgtaaccctaaatcaagtggaccgaaatgaagaaaagaaaccaaagtcgcagagggagtaagcgcacagagaagaaaaa 15272096  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 12199897 - 12199984
Alignment:
Q  128 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||||  ||||||| ||   |||||| |||||||| |||||| || |||||||||| ||||||||||| ||||||||||||||    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 12199984  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 12444325 - 12444412
Alignment:
Q  128 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||||  ||||||| ||   |||||| |||||||| |||||| || |||||||||| ||||||||||| ||||||||||||||    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 12444412  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 12194916 - 12194978
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| |||||| || ||||||||||| |||||||||| ||||| ||||||||    
T  12194916 gaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttat 12194978  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 12439344 - 12439406
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| |||||| || ||||||||||| |||||||||| ||||| ||||||||    
T  12439344 gaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttat 12439406  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 48735806 - 48735716
Alignment:
Q  125 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||| || ||||||||||||||   ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  48735806 ctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48735716  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 48870130 - 48870219
Alignment:
Q  126 tcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||| ||||||||||||||   |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  48870130 tcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttat 48870219  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 48885816 - 48885905
Alignment:
Q  126 tcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||| ||||||||||||||   |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  48885816 tcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttat 48885905  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 7770991 - 7771081
Alignment:
Q  125 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||| ||||| | ||||||||   |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7770991 ctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttat 7771081  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 45372548 - 45372458
Alignment:
Q  125 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||||| ||  |||||||||||   ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  45372548 ctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattat 45372458  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 48171076 - 48170990
Alignment:
Q  129 tgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| ||||||||||||||   ||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||| |||||||    
T  48171076 tgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttat 48170990  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 48862857 - 48862918
Alignment:
Q  154 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  48862857 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttat 48862918  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 48156888 - 48156828
Alignment:
Q  155 ggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||    
T  48156888 ggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttat 48156828  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 48891024 - 48891084
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctctt 213  Q
    ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  48891024 gaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctctt 48891084  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 7789704 - 7789766
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  7789704 gaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttat 7789766  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 45366683 - 45366622
Alignment:
Q  154 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttat 45366622  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 48148173 - 48148086
Alignment:
Q  128 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||| ||||||||||| ||    |||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||||||||    
T  48148173 atgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttat 48148086  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 33134285 - 33134227
Alignment:
Q  157 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttat 33134227  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 50668645 - 50668717
Alignment:
Q  140 ttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 212  Q
    |||||||| | | |||||| || ||||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  50668645 ttcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctct 50668717  T

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Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 7238183 - 7238121
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| || ||||| ||||||||  |||||||||| ||||||||||||||||||||||||||    
T  7238183 gaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 45385249 - 45385191
Alignment:
Q  154 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 212  Q
    |||||||| || || ||||| ||||||||||||| ||||||||||||||||||||||||    
T  45385249 aggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctct 45385191  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 7904657 - 7904709
Alignment:
Q  163 gtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||| |||||||||||||||||||| ||||||||||  ||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttat 7904709  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 48902567 - 48902627
Alignment:
Q  155 ggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||| ||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||    
T  48902567 ggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48902627  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 49041591 - 49041539
Alignment:
Q  163 gtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||| ||||||||  |||||||||||||||| ||||||||||||||||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttat 49041539  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 7813095 - 7813157
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || ||||||||||||||    
T  7813095 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7813157  T

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Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 7822584 - 7822646
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || ||||||||||||||    
T  7822584 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7822646  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 7877344 - 7877397
Alignment:
Q  162 ggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| ||||||||||||||||||||| ||||||||   ||||||||||||||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttat 7877397  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 48875447 - 48875520
Alignment:
Q  139 gttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 212  Q
    |||||||||||   ||||||| | || || ||||| || ||||||||||||||||| |||||||||||||||||    
T  48875447 gttcaaattctgctgaggttatcagtcaagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctct 48875520  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 7800252 - 7800312
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctctt 213  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || ||||||||||||    
T  7800252 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctctt 7800312  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 7907940 - 7908002
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| ||||||| ||||||||| |  ||| ||||||| ||||||||||||||    
T  7907940 gaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttat 7908002  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 7786058 - 7786103
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaag 198  Q
    |||||| ||||||||||||||||||   ||||||||||||||||||    
T  7786058 gaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaag 7786103  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 33133653 - 33133714
Alignment:
Q  154 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||  |||| |||||||| |||||||||| | ||||||||  |||||||||||||||    
T  33133653 aggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttat 33133714  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 48898342 - 48898399
Alignment:
Q  158 taccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||| ||||| ||||||| ||||||||| || ||||||||||||||||| || |||||    
T  48898342 tacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttat 48898399  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 47207552 - 47207608
Alignment:
Q  156 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 212  Q
    |||||||||||| |||||||||||||| ||  | ||||| |||||||| ||||||||    
T  47207552 gttaccggtgaagtctcttatacgttttaagagtgtttggaagtcttgattttctct 47207608  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 42562791 - 42562735
Alignment:
Q  156 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 212  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  42562791 gttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctct 42562735  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 29712929 - 29712870
Alignment:
Q  156 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||||||| |||||||| |||||||| |||||||||||||  ||||||||||||||    
T  29712929 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 29712870  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 29687669 - 29687725
Alignment:
Q  156 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 212  Q
    |||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||    
T  29687669 gttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 29695768 - 29695829
Alignment:
Q  154 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||| || || |||||||| ||||||||||||||||||||||  ||||| ||||||||    
T  29695768 aggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttat 29695829  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 178650 - 178693
Alignment:
Q  169 tctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  178650 tctcttattcgtttcaaatgtgtttgtaagtcttggttatctct 178693  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 1812040 - 1812102
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||| ||||| | ||| ||||||| |||||| ||||||||||  ||||||||||||||    
T  1812040 gaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttat 1812102  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 24322086 - 24322139
Alignment:
Q  162 ggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24322086 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttat 24322139  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 24415456 - 24415514
Alignment:
Q  157 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 24309796 - 24309854
Alignment:
Q  157 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||||| || |||||||| |||||||||| |||||||||||  ||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttat 24309854  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 24340030 - 24340091
Alignment:
Q  154 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||||| || |||||||| ||||||||||  ||||||||||| |||||||| |||||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttat 24340091  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 11025000 - 11024938
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||  |||||||    
T  11025000 gaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttat 11024938  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 11015988 - 11015941
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtc 200  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  11015988 gaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtc 11015941  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 11006425 - 11006363
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| || |||||||||||||| || ||||||||||| |||||  |||||||    
T  11006425 gaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 11006363  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 47452370 - 47452308
Alignment:
Q  153 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    |||||| |||||||| |||||| |||| ||||| ||| ||| |||||| ||||||||||||||    
T  47452370 gaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 47452308  T

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Target: scaffold0508 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 11878 - 11939
Alignment:
Q  154 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 215  Q
    ||||||||| | || |||||||| |||||||||| |||||||||||| ||||||||||||||    
T  11878 aggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttat 11939  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 48883373 - 48883460
Alignment:
Q  129 tgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttc---aaatgcgtttgtaagtcttggttttctctt 213  Q
    |||||||||  |||||||| | | ||||||||  ||||| |||||| ||||||||   ||||| ||||||||| ||||||||||||||    
T  48883373 tgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaaaaaatgtgtttgtaagccttggttttctctt 48883460  T

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