View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616-Insertion-12 (Length: 205)
Name: NF5616-Insertion-12
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 25708512 - 25708710
Alignment:
| Q |
7 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgtagttcaaagctcatac |
106 |
Q |
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| T |
25708512 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgaagttcaaagctcatac |
25708611 |
T |
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| Q |
107 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgc |
205 |
Q |
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| T |
25708612 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgc |
25708710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 31407353 - 31407243
Alignment:
| Q |
92 |
gttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctc |
191 |
Q |
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| T |
31407353 |
gttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcttg |
31407254 |
T |
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| Q |
192 |
atttcatgtgc |
202 |
Q |
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| T |
31407253 |
atttcatgtgc |
31407243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 31475957 - 31475759
Alignment:
| Q |
7 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgtagttcaaagctcatac |
106 |
Q |
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| T |
31475957 |
agataattctttacactgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatac |
31475858 |
T |
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| Q |
107 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgc |
205 |
Q |
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| T |
31475857 |
agcttttttagtattgacaatcacctctgtctattcattttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgc |
31475759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 40843339 - 40843141
Alignment:
| Q |
7 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgtagttcaaagctcatac |
106 |
Q |
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| T |
40843339 |
agataattctttacactgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatac |
40843240 |
T |
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| Q |
107 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgc |
205 |
Q |
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| T |
40843239 |
agcttttttagtattgacaatcacctctgtctattcgttttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgc |
40843141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 31284877 - 31284988
Alignment:
| Q |
92 |
gttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctc |
191 |
Q |
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| T |
31284877 |
gttcaaagctcatgctgcgtttttggtattgacaatcacctcattatattcatttttctttgataaagtagttaatggaaaaccagatgcatatagcctc |
31284976 |
T |
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| Q |
192 |
atttcatgtgct |
203 |
Q |
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| T |
31284977 |
atttcatgtgct |
31284988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 31643751 - 31643700
Alignment:
| Q |
152 |
tgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgct |
203 |
Q |
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| T |
31643751 |
tgataaagtggtgaatggaaaaccagatgcatatagcctcatttcttgtgct |
31643700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 31317519 - 31317631
Alignment:
| Q |
93 |
ttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctca |
192 |
Q |
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| T |
31317519 |
ttcaaagctcattcggcatttctggtattgacactcacttcaatctattcctttttctttgataaagtcatgaatgggaaaccagatgcatatagtttaa |
31317618 |
T |
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| Q |
193 |
tttcatgtgctgc |
205 |
Q |
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| T |
31317619 |
tttcatgtgctgc |
31317631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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