View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616-Insertion-2 (Length: 1120)
Name: NF5616-Insertion-2
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Complemental strand, 5871372 - 5870753
Alignment:
| Q |
8 |
tgctttactaccaaacaa-aggattctatgaacaattaatatgttaattttgcacaaggacatggattatggaatctaaaaatagaaatttgattttcaa |
106 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||| || |
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| T |
5871372 |
tgctttactaccaaacaatatgattctatgaacaattaatatgttaattttgcgcaaggacatggattaaggaatctataaatagaaatttggtttcaaa |
5871273 |
T |
|
| Q |
107 |
aaat----tgttacatttgatcaagtaataattatacaactttttt-atacaaatttatttgttccaactatttaatcaatgcctctaaaacactcttta |
201 |
Q |
| |
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| || |||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
5871272 |
atataagttgttacgtttaatcaagtaataattatacaattttttttatacaaatttatttgttttaaccgtttaatcaatgcctctaaaacacttttta |
5871173 |
T |
|
| Q |
202 |
tcatcctcctttcacaaaagctctagagaaagcgttaaattatagcggatagttattgtacataaaactttgaccaaactatttggtaaacaacgataat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5871172 |
tcatcctcctttcacaaaagctctagagaaagcgttaagttatagcagatagttattgtacataaaactttgaccaaactatttgataaacaacgataat |
5871073 |
T |
|
| Q |
302 |
atttaaacacacccaaatat--ttcctatactcattgaacacttaaatttcttgcatcatatttgtctagcaaatatctttctttagttaaagttatttt |
399 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
5871072 |
atttgaacacacccaaatataattcctatactcattcaacacttaaatttcttgcttcatatttgtctaacaaatatctttctttagttaaagttatttt |
5870973 |
T |
|
| Q |
400 |
atcatggactaataacannnnnnnnnactacc-tataacattttttgctcaactatcctaagtgannnnnnnnaaagatcaatattaatatgctggcatt |
498 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
5870972 |
atcatggactaataaca-ttttttttactaccttataacattttttgctcaactattctaagtgattttttttaaagatcaatattaatatgttggcatt |
5870874 |
T |
|
| Q |
499 |
a---atgtttgaaccctcaactttcttatcatctcactacttaatttttccaccacaaccaccaaatcagtcatatatcccctattatcatttaagttta |
595 |
Q |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5870873 |
atatatgtttgaaccctcaactttcttatcatttcactacttaatttttccaccacaaccaccaaatcagtcatatatcccctattatcatttaagttta |
5870774 |
T |
|
| Q |
596 |
tagtgtgaaagtgtagcatat |
616 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
5870773 |
tagtgtgaaagtgtagcatat |
5870753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 692 - 884
Target Start/End: Complemental strand, 5870680 - 5870490
Alignment:
| Q |
692 |
ataatatgaagtttgaccataaggtaaatataaccggggtcaaaaattgtttcattcaaaagttgaaatcgaattcttacaaatga---attattttgta |
788 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
5870680 |
ataatatgaagtttgaccgtaagataaatataaccgga-tcaaaa-ttgtttcattcaaaagttgaaatcgaattcttacaaatgattcattattttgta |
5870583 |
T |
|
| Q |
789 |
aacttattaaccatttaggcttaattaattttgnnnnnnnnaccgacatttagtatcaacttagtaataaataactatgctagcagaaagtagtat |
884 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5870582 |
aacttattaaccatttaggcttaatt-attttg--ttttttaccgacatttagtatcaacttagtaataaataactatgctagcaaaaagtagtat |
5870490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 978 - 1094
Target Start/End: Complemental strand, 5870467 - 5870350
Alignment:
| Q |
978 |
aatacataaaccggcttcatatcggctcttta-tttacaaaaggaccatgaaggaaaaaagggtgaattaggataatagagtg-aaaataaatcattg-- |
1073 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
5870467 |
aatacataaac-ggctacatattggctctttaatttacaaaaggaccaagaaagaaaaaagg-tgaattaggataatagagtgaaaaataaatcattgtt |
5870370 |
T |
|
| Q |
1074 |
ttacatttggtaggaagtaaa |
1094 |
Q |
| |
|
||||| ||||||||||||||| |
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|
| T |
5870369 |
ttaca-ttggtaggaagtaaa |
5870350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 18221030 - 18221066
Alignment:
| Q |
111 |
tgttacatttgatcaagtaataattatacaacttttt |
147 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
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|
| T |
18221030 |
tgttacatttgattaagtaataattatacaacttttt |
18221066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 2911511 - 2911565
Alignment:
| Q |
111 |
tgttacatttgatcaagtaataattatacaacttttttatacaaatttatttgtt |
165 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| || ||| ||||||||| |
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| T |
2911511 |
tgttacatttgatcaagtaatgattatactacttttttttaaaaacttatttgtt |
2911565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 10029231 - 10029183
Alignment:
| Q |
111 |
tgttacatttgatcaagtaataattatacaacttttttatacaaattta |
159 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| ||| ||||||| |
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|
| T |
10029231 |
tgttacttttgatcaagtaatgattatacaactttttcataaaaattta |
10029183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 3137469 - 3137415
Alignment:
| Q |
111 |
tgttacatttgatcaagtaataattatacaacttttttatacaaatttatttgtt |
165 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||| ||| ||| ||||||||| |
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|
| T |
3137469 |
tgttacttttgatcaagtaattattacacaactttttcatataaacttatttgtt |
3137415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 20681883 - 20681851
Alignment:
| Q |
127 |
gtaataattatacaacttttttatacaaattta |
159 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
20681883 |
gtaataattatacaacttttttatacaaattta |
20681851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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