View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5616-Insertion-4 (Length: 875)
Name: NF5616-Insertion-4
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616-Insertion-4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 826; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 8 - 870
Target Start/End: Complemental strand, 3946012 - 3945152
Alignment:
| Q |
8 |
ctctcaagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3946012 |
ctctcaagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacg |
3945913 |
T |
|
| Q |
108 |
ttattggacaagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaactcaaacaaacgtagtaacaatactactctcatcaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945912 |
ttattggacaagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaactcaaacaaacgtagtaacaatactactctcatcaaa |
3945813 |
T |
|
| Q |
208 |
ataccctccaccattgatacttctatttcttcttctccttcttcaactcctagttccacaccaaacaccacttcttcaaattcaaccttaaatcataata |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945812 |
ataccctccaccattgatacttctatttcttcttctccttc---aactcctagttccacaccaaacaccacttcttcaaattcaaccttaaatcataata |
3945716 |
T |
|
| Q |
308 |
ttagtcctatgttttatggtttatcaagtagtaactcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggtta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945715 |
ttagtcctatgttttatggtttatcaagtagtaactcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggtta |
3945616 |
T |
|
| Q |
408 |
tgattttcagcctcagatgaatactattggattaggcttttcatccgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttact |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945615 |
tgattttcagcctcagatgaatactattggattaggcttttcatctgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttact |
3945516 |
T |
|
| Q |
508 |
tcaagatatggttcaatctttagttcttcttctgtaccaagtaatgcatcagttatgccctctctgctgcaacataaattcatcaatgatggtagcaaca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945515 |
tcaagatatggttcaatctttagttcttcttctgtaccaagtaatgcatcagttatgccttctctgctgcaacataaattcatcaatgatggtagcaaca |
3945416 |
T |
|
| Q |
608 |
gttttcagggcttggaattcaacaatttggggaatggaagtgagaaaggaatgaagaaagatgaaggagagatggagcatgtgggtggtttgtatgatcc |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945415 |
gttttcagggcttggaattcaacaatttggggaatggaagtgagaaaggaacgaagaaagatgaaggagagatggagcatgtgggtggtttgtatgatcc |
3945316 |
T |
|
| Q |
708 |
agctgcttcttcactttactggaatacagcatcatcatcagctattggtgtttggaacgatcaagcttctaatattggttcatcagttacttctttgatc |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945315 |
agctgcttcttcactttactggaatacagcatcatcatcagctattggtgtttggaacgatcaagcttctaatattggttcatcagttacttctttgatc |
3945216 |
T |
|
| Q |
808 |
tagagtgaacaataaacttaatcctcagttcaagttcaaggtcatc-ttaatttggtacctttg |
870 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3945215 |
tagagtgaacaataaactcaatcctcagttcaagttcaaggtcatctttaatttggtacctttg |
3945152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 41335288 - 41335427
Alignment:
| Q |
13 |
aagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttatt |
112 |
Q |
| |
|
|||||||| ||||| || ||| | || ||||| |||||||||||||||||||| | ||||| ||||||||||| || || || | || | ||||||| |
|
|
| T |
41335288 |
aagtgtcctcgttgcgaatcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttatt |
41335387 |
T |
|
| Q |
113 |
ggacaagaggtggtactcttagaaatgttcctgttggtgg |
152 |
Q |
| |
|
|||||||||| ||| | | |||||||||||||||||||| |
|
|
| T |
41335388 |
ggacaagagggggtgcattaagaaatgttcctgttggtgg |
41335427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 39741077 - 39741198
Alignment:
| Q |
49 |
tgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactcttagaaatgttcctgttg |
148 |
Q |
| |
|
||||| ||||||||||||||| | | || |||||| ||||||| ||| |||||| | | |||||||| | |||||| || | || ||||||||||||| |
|
|
| T |
39741077 |
tgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaaggaatgttcctgttg |
39741176 |
T |
|
| Q |
149 |
gtggtggttacagaagaaacaa |
170 |
Q |
| |
|
| ||||| | ||||| |||||| |
|
|
| T |
39741177 |
gaggtggatgcagaaaaaacaa |
39741198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 5e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 35202317 - 35202472
Alignment:
| Q |
15 |
gtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattgg |
114 |
Q |
| |
|
||||||||||||||| ||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||| ||||| || ||| | |||||| |
|
|
| T |
35202317 |
gtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgg |
35202416 |
T |
|
| Q |
115 |
acaagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaa |
170 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
35202417 |
acaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaa |
35202472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 22483539 - 22483403
Alignment:
| Q |
16 |
tgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattgga |
115 |
Q |
| |
|
|||||| | ||||||||| ||||| || ||||||||||||||||| |||||| | |||||||||||| ||||||| || |||| | | ||||||| |
|
|
| T |
22483539 |
tgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattgga |
22483440 |
T |
|
| Q |
116 |
caagaggtggtactcttagaaatgttcctgttggtgg |
152 |
Q |
| |
|
| | ||||||||| || || ||||||||||||||||| |
|
|
| T |
22483439 |
ctaaaggtggtacactaaggaatgttcctgttggtgg |
22483403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 7435196 - 7435320
Alignment:
| Q |
16 |
tgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattgga |
115 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||||| |||| ||||||||||||| | || || || ||||| ||||| || |||||| | | || |||| |
|
|
| T |
7435196 |
tgtccacgttgtgaatcaaccaacacaaaattttgctacttcaacaactacagtctctctcagcccagacacttctgcaagacttgcagaaggtactgga |
7435295 |
T |
|
| Q |
116 |
caagaggtggtactcttagaaatgt |
140 |
Q |
| |
|
|||||||||| |||| |||||||| |
|
|
| T |
7435296 |
caagaggtggcgctctaagaaatgt |
7435320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 35721705 - 35721844
Alignment:
| Q |
16 |
tgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattgga |
115 |
Q |
| |
|
|||||| | ||||| ||| |||||||||||||||||||||||||||| |||| ||| ||||| | || ||||||| |||||| ||| | | |||| |
|
|
| T |
35721705 |
tgtccaagatgtgattcaacaaacacaaagttttgttactacaacaattacaacaagtctcaacctcgtcacttctgtagagcttgtaaaagacactgga |
35721804 |
T |
|
| Q |
116 |
caagaggtggtactcttagaaatgttcctgttggtggtgg |
155 |
Q |
| |
|
| | |||||| ||||| | |||||||||||||||||||| |
|
|
| T |
35721805 |
ctaaaggtggaactctacgcaatgttcctgttggtggtgg |
35721844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 23663651 - 23663697
Alignment:
| Q |
106 |
cgttattggacaagaggtggtactcttagaaatgttcctgttggtgg |
152 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||| |||||||| |
|
|
| T |
23663651 |
cgttattggacaagagggggtgcacttagaaatgttccagttggtgg |
23663697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 8132169 - 8132015
Alignment:
| Q |
16 |
tgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattgga |
115 |
Q |
| |
|
|||||| | ||||| ||| ||||||||||||| || |||||||||||||||| | | ||||||||| | ||||| || ||| |||| |||||||||| |
|
|
| T |
8132169 |
tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga |
8132070 |
T |
|
| Q |
116 |
caagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaa |
170 |
Q |
| |
|
| | ||||||| | ||| |||| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
8132069 |
ctaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa |
8132015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 34645998 - 34646132
Alignment:
| Q |
37 |
aacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactcttagaa |
136 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||| ||| | || | | | |||||||| |||||| | |||||| |
|
|
| T |
34645998 |
aacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaa |
34646097 |
T |
|
| Q |
137 |
atgttcctgttggtggtggttacagaagaaacaac |
171 |
Q |
| |
|
| |||||||||||||||||| |||| ||||||| |
|
|
| T |
34646098 |
acattcctgttggtggtggttcaagaaaaaacaac |
34646132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 24878860 - 24878995
Alignment:
| Q |
34 |
tcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactctta |
133 |
Q |
| |
|
||||||||||| || || |||||||| |||||||| || | ||||||||| |||| || |||| |||| | | |||||||||| |||||| | || | |
|
|
| T |
24878860 |
tcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctca |
24878959 |
T |
|
| Q |
134 |
gaaatgttcctgttggtggtggttacagaagaaaca |
169 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
24878960 |
gaaatgttcctgttggtggtggctgcagaaaaaaca |
24878995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 41086280 - 41086156
Alignment:
| Q |
31 |
tcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactc |
130 |
Q |
| |
|
||||||||||| || || |||||||||||||| ||||| ||||| || ||| | |||| || |||| ||| | |||||||||||| | |||||| ||| |
|
|
| T |
41086280 |
tcatcaaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctc |
41086181 |
T |
|
| Q |
131 |
ttagaaatgttcctgttggtggtgg |
155 |
Q |
| |
|
|| | |||||||||||||||||||| |
|
|
| T |
41086180 |
ttcggaatgttcctgttggtggtgg |
41086156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 13481013 - 13481125
Alignment:
| Q |
13 |
aagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttatt |
112 |
Q |
| |
|
||||||||| | ||||||||| | |||||||| || || |||||||||||||| || || ||||||||||||||||||| ||| | || | | | |||| |
|
|
| T |
13481013 |
aagtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatatt |
13481112 |
T |
|
| Q |
113 |
ggacaagaggtgg |
125 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
13481113 |
ggacaaaaggtgg |
13481125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 28437329 - 28437412
Alignment:
| Q |
35 |
caaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaa |
118 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| | | ||||||||||||||||| ||| | |||| | | |||||||||| |
|
|
| T |
28437329 |
caaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattggacaa |
28437412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 33740250 - 33740199
Alignment:
| Q |
16 |
tgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactaca |
67 |
Q |
| |
|
|||||||||||||| ||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
33740250 |
tgtccacgttgtgattcaaccaacactaagttttgttactacaacaactaca |
33740199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 33823811 - 33823861
Alignment:
| Q |
15 |
gtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaacta |
65 |
Q |
| |
|
||||||| | || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33823811 |
gtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaacta |
33823861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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