View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616-Insertion-5 (Length: 725)
Name: NF5616-Insertion-5
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616-Insertion-5 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 7 - 725
Target Start/End: Complemental strand, 45879 - 45162
Alignment:
| Q |
7 |
agtcatgtctggtatttgacatctgttagtgtctaacatcaacacaacactgacaggtataattacattttattatgctannnnnnnaaattattatcgg |
106 |
Q |
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| T |
45879 |
agtcatgtctggtatttgacatctgttagtgtctaacatcaacacaacactgacaggtataattacattttattatgctatttttttaaattattatcgg |
45780 |
T |
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| Q |
107 |
tctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaacca |
206 |
Q |
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| T |
45779 |
tctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaacca |
45680 |
T |
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| Q |
207 |
accatttgatcggttaaattgattaattagtacttttctttttgtgttaatatattaggttttattatttgcttactttttaataccgtggcatttgaat |
306 |
Q |
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| T |
45679 |
accatttgatcggttaaattgattaattagtacttttctttttgtgttaatatattaggttttattatttgcttactttttaataccgtggcatttgaat |
45580 |
T |
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| Q |
307 |
ttttaagtatttgatgcgcttttcattttaaaagcagattaaaattgactttaagaaaaatgtaattgaggaaatagtatttgcaactttttggatacta |
406 |
Q |
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| T |
45579 |
ttttaagtatttgatgcgcttttcattttaaaagcagattaaaattgactttaagaaaaatgtaattgaggaaatagtatttgcaactttttggatacta |
45480 |
T |
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| Q |
407 |
agaagcaaacctagtttttgtttaagcatgacaggggttttatagaaaaaggctgtttactgaaatttggattgttatatcaaggtttttgatgtcttta |
506 |
Q |
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| T |
45479 |
agaagcaaacctagtttttgtttaagcatgacaggggttttatagaaaaaggctgtttactgaaatttggattgttatatcaaggtttttgatgtcttta |
45380 |
T |
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| Q |
507 |
tgatcgcatagaagtatatttaacaattattctctgtaatatcgtggattatgtcgtgatcgcaatttaaaactttgcgcacggagaattgcttgaaaat |
606 |
Q |
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| T |
45379 |
tgatcgcatagaagtatatttaacaattattctctgtaatatcgtggattatgtcgtgatcgcaatttaaaactttgcgcacggagaattgcttgaaaat |
45280 |
T |
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| Q |
607 |
ttggtttttggatgatgcagaccaattcaaattgcacaaattcttcattctcagggacgggaatcatgtcggcacttgtgcaggcccgtgcccccacttt |
706 |
Q |
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| T |
45279 |
ttggtttttggatgatgcagaccaattcaaattgcacaaattcttcattctcagggac-ggaatcatgtcggcacttgtgcaggcccgtgcccccacttt |
45181 |
T |
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| Q |
707 |
gtttctgattttcttggta |
725 |
Q |
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| T |
45180 |
gtttctgattttcttggta |
45162 |
T |
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